Publications




A Eukaryote-Wide Perspective on the Diversity and Evolution of the ARF GTPase Protein Family
Romana Vargová, Jeremy G. Wideman, Romain Derelle, Vladimír Klimeš, Richard A. Kahn, Joel B. Dacks, Marek Eliáš
Year: 2021, GENOME BIOLOGY AND EVOLUTION
journal article

A Synopsis of Orthotrichum s. lato (Bryophyta, Orthotrichaceae) in China, with Distribution Maps and a Key to Determination
Vítězslav Plášek, Zuzana Komínková, Ryszard Ochyra, Lucie FIALOVÁ, Shuiliang Guo, Mamtimin Sulayman
Year: 2021, PLANTS-BASEL
journal article

Amino Acid Composition in Various Types of Nucleic Acid-Binding Proteins
Martin Bartas, Jiří Červeň, Simona Guziurová, Kristyna Slychko, Petr Pečinka
Year: 2021, International Journal of Molecular Sciences
journal article

Analyses of viral genomes for G-quadruplex forming sequences reveal their correlation with the type of infection
Natália Bohálová, Alessio Cantara, Martin Bartas, Patrik Kaura, Jiří Šťastný, Petr Pečinka, Miroslav Fojta, Jean-Louis Mergny, Václav Brázda
Year: 2021, BIOCHIMIE
journal article

Analysis of diverse eukaryotes suggests the existence of an ancestral mitochondrial apparatus derived from the bacterial type II secretion system
Horváthová Lenka, Vojtěch Žárský, Tomáš Pánek, Romain Derelle, Jan Pyrih, Alžběta Motyčková, Veronika Klápšťová, Martina Vinopalová, Lenka Marková, Luboš Voleman, Vladimír Klimeš, Markéta Petrů, Zuzana Vaitová, Ivan Čepička, Klára Hryzáková, Karel Harant, Michael W. Gray, Mohamed Chami, Ingrid Guilvout, Olivera Francetic, B. Franz Lang, Čestmír Vlček, Anastasios D. Tsaousis, Marek Eliáš, Pavel Doležal
Year: 2021, NATURE COMMUNICATIONS
journal article

Analysis of Stop Codons within Prokaryotic Protein-Coding Genes Suggests Frequent Readthrough Events
Frida Belinky, Ishan Ganguly, Eugenia Poliakov, Vyacheslav Yurchenko, Igor B. Rogozin
Year: 2021, INT J MOL SCI
journal article

Beta-lactam resistance development during the treatment processes of municipal wastewater treatment plants
Tereza Stachurová, Hana Piková, Martin Bartas, Jaroslav Semerád, Kateřina Svobodová, Kateřina Malachová
Year: 2021, CHEMOSPHERE
journal article

Capsid Structure of Leishmania RNA Virus 1
Michaela Procházková, Tibor Fuzik, Danyil Grybchuk, Francesco Luca Falginella, Lucie Podešvová, Vyacheslav Yurchenko, Robert Vacha, Pavel Plevka
Year: 2021, J VIROL
journal article

Catalase impairs Leishmania mexicana development and virulence
Jovana Sádlová, Lucie Podešvová, Tomáš Bečvář, Claretta Bianchi, Evgeny S. Gerasimov, Andreu Saura Rebollar, Kristýna Glanzová, Tereza Leštinová, Nadezhda S. Matveeva, Ĺubomíra Chmelová
Year: 2021, Virulence
journal article

Characiopsis Borz? belongs to the Eustigmatophyceae
Amaral Raquel, Tereza Ševčíková, Marek Eliáš, Santos Lilia M. A.
Year: 2021, EUR J PHYCOL
journal article

Characterization of a new cosmopolitan genus of trypanosomatid parasites, Obscuromonas gen. nov. (Blastocrithidiinae subfam. nov.)
Julius Lukes, Martina Tesarova, Vyacheslav Yurchenko, Jan Votypka
Year: 2021, EUR J PROTISTOL
journal article

Community changes in odonate monitoring: why are long?term studies so relevant?
Aleš Dolný, Petr Pyszko, Hana Šigutová
Year: 2021, Insect Conservation and Diversity
journal article

Complete minicircle genome of Leptomonas pyrrhocoris reveals sources of its non-canonical mitochondrial RNA editing events
Evgeny S. Gerasimov, Anna A. Gasparyan, Dmitry A. Afonin, Sara L. Zimmer, Natalia Kraeva, Julius Lukeš, Vyacheslav Yurchenko, Alexander Kolesnikov
Year: 2021, NUCLEIC ACIDS RES
journal article

Could Bryophagous Beetles (Coleoptera: Byrrhidae) Help Us Understand Bryophyte Taxonomy? Preferences within the Hypnum cupressiforme Hedw. Species Complex
Petr Pyszko, Michaela Drgová, Stanislav Ožana, Ondřej Dorňák, David Rožek, Daniel Lee Číp, Vítězslav Plášek, Pavel Drozd
Year: 2021, PLANTS-BASEL
journal article

Development of Monoxenous Trypanosomatids and Phytomonads in Insects
Alexander O. Frolov, Aleksei Kostygov, Vyacheslav Yurchenko
Year: 2021, TRENDS PARASITOL
journal article

Differences in mitochondrial NADH dehydrogenase activities in trypanosomatids
Petra Čermáková, Anna Maďarová, Peter Baráth, Jana Bellová, Vyacheslav Yurchenko, Anton Horváth
Year: 2021, PARASITOLOGY
journal article

Diverse telomeres in trypanosomatids
Ester Poláková, Kristina Záhonová, Amanda Tábita da Silva Albanaz, Anzhelika Butenko, Lukeš Julius, Vyacheslav Yurchenko
Year: 2021, PARASITOLOGY
journal article

DNA Methylation, Deamination, and Translesion Synthesis Combine to Generate Footprint Mutations in Cancer Driver Genes in B-Cell Derived Lymphomas and Other Cancers
Igor B. Rogozin, Abiel Roche-Lima, Kathrin Tyryshkin, Kelvin Carrasquillo-Carrion, Artem G. Lada, Lennard Y. Poliakov, Elena Schwartz, Andreu Saura Rebollar, Vyacheslav Yurchenko, David N. Cooper, Anna R. Panchenko, Youri I. Pavlov
Year: 2021, Frontiers in Genetics
journal article

Editorial: Symbioses Between Protists and Bacteria/Archaea
Aleksei Kostygov, Joao M. P. Alves, Vyacheslav Yurchenko
Year: 2021, Frontiers in Microbiology
journal article

Effect of tree species identity and related habitat parameters on understorey bryophytes - interrelationships between bryophyte, soil and tree factors in a 50-year-old experimental forest
Kaja Rola, Vítězslav Plášek, Katarzyna Rozek, Szymon Zubek
Year: 2021, Plant and Soil
journal article

Effects of Landscape Patterns and Their Changes to Species Richness, Species Composition, and the Conservation Value of Odonates (Insecta)
Aleš Dolný, Stanislav Ožana, Michal Burda, Filip Harabiš
Year: 2021, Insects
journal article

Endosymbiont Capture, a Repeated Process of Endosymbiont Transfer with Replacement in Trypanosomatids Angomonas spp.
Tomáš Skalický, Joao M. P. Alves, Anderson C. Morais, Jana Režnarová, Anzhelika Butenko, Julius Lukeš, Myrna G. Serrano, Gregory A. Buck, Marta M. G Teixeira, Erney P. Camargo, Mandy Sanders, James A Cotton, Vyacheslav Yurchenko, Aleksei Kostygov
Year: 2021, Pathogens
journal article

Estimating the effect of tracking tag weight on insect movement using video analysis: A case study with a flightless orthopteran
Oto Kaláb, David Musiolek, Pavel Rusnok, Petr Hurtík, Martin Tomis, Petr Kočárek
Year: 2021, PLOS ONE
journal article

Estimation of the Recent Expansion Rate of Ruspolia nitidula (Orthoptera) on a Regional and Landscape Scale
Oto Kaláb, Petr Pyszko, Petr Kočárek
Year: 2021, Insects
journal article

Euglenozoa: taxonomy, diversity and ecology, symbioses and viruses
Aleksei Kostygov, Anna Karnkowska, Jan Votypka, Daria Tashyreva, Kacper Maciszewski, Vyacheslav Yurchenko, Julius Lukeš
Year: 2021, Open Biology
journal article

Evolution of Diverse Strategies for Promoter Regulation
Václav Brázda, Martin Bartas, Richard Bowater
Year: 2021, Trends in Genetics
journal article

Expansion and transformation of the minor spliceosomal system in the slime mold Physarum polycephalum
Graham E. Larue, Marek Eliáš, Scott W. Roy
Year: 2021, CURR BIOL
journal article

First record of the desert earwig Forficula lucasi Dohrn, 1865 (Dermaptera: Forficulidae) in Greece: A hitchhiker among the refugees or a seldom encounter?
Savvas Zafeiriou, Petr Kočárek, Konstantinos Kalaentzis
Year: 2021, Journal of Insect Biodiversity
journal article

Genetic diversity of Leishmania tropica: Unexpectedly complex distribution pattern
Arzuv Charyyeva, Ülfet Cetinkaya, Bora Özkan, Serkan Sahin, Nermin Yaprak, Izzet Sahin, Vyacheslav Yurchenko, Aleksei Kostygov
Year: 2021, ACTA TROP
journal article

Genome Analysis of Endotrypanum and Porcisia spp., Closest Phylogenetic Relatives of Leishmania, Highlights the Role of Amastins in Shaping Pathogenicity
Amanda Tábita da Silva Albanaz, Evgeny S Gerasimov, Jeffrey J. Shaw, Jovana Sádlová, Julius Lukeš, Petr Volf, Fred R. Opperdoes, Aleksei Kostygov, Anzhelika Butenko, Vyacheslav Yurchenko
Year: 2021, Genes
journal article

Genomics and transcriptomics yields a system-level view of the biology of the pathogen Naegleria fowleri
Emily K. Herman, Alex Greninger, Mark van der Giezen, Michael L. Ginger, Inmaculada Ramirez-Macias, Haylea C. Miller, Matthew J. Morgan, Anastasios D. Tsaousis, Katrina Velle, Romana Vargová, Kristýna Záhonová, Sebastian Rodrigo Najle, Georgina MacIntyre, Norbert Muller, Mattias Wittwer, Denise C. Zysset-Burri, Marek Eliáš, Claudio H. Slamovits, Matthew T. Weirauch, Lillian Fritz-Laylin, Francine Marciano-Cabral, Geoffrey J. Puzon, Tom Walsh, Charles Chiu, Joel B. Dacks
Year: 2021, BMC BIOLOGY
journal article

G-Quadruplex in Gene Encoding Large Subunit of Plant RNA Polymerase II: A Billion-Year-Old Story
Adriana Volná, Martin Bartas, Václav Karlický, Jakub Nezval, Kristýna Kundrátová, Petr Pečinka, Vladimír Špunda, Jiří Červeň
Year: 2021, INT J MOL SCI
journal article

G-Quadruplex in Gene Encoding Large Subunit of Plant RNA Polymerase II: A Billion-Year-Old Story
Adriana Volná, Martin Bartas, Václav Karlický, Jakub Nezval, Kristýna Kundrátová, Petr Pečinka, Vladimír Špunda, Jiří Červeň
Year: 2021, International Journal of Molecular Sciences
journal article

G-quadruplexes in H1N1 influenza genomes
Václav Brázda, Otília Porubiaková, Allesio Cantara, Natália Bohálová, Jan Coufal, Martin Bartas, Miroslav Fojta, Jean Louis Mergny
Year: 2021, BMC Genomics
journal article

Influence of Ampicillin on Biofilm Formation of Bacterial Strains in Wastewater
Tereza STACHUROVÁ, Nikola Sýkorová, Kateřina Malachová
Year: 2021
presentations (congresses, symposia, conferences, workshops)

Monitoring of Heavy Metals and Nitrogen Concentrations in Mosses in the Vicinity of an Integrated Iron and Steel Plant: Case Study in Czechia
Irena Pavlíková, Oldřich Motyka, Vítězslav Plášek, Jan Bitta
Year: 2021, Applied Sciences
journal article

Protist diversity: Novel groups enrich the algal tree of life
Marek Eliáš
Year: 2021, CURR BIOL
journal article

Reductionist Pathways for Parasitism in Euglenozoans? Expanded Datasets Provide New Insights
Anzhelika Butenko, Michael Hammond, Mark C. Field, Michael L. Ginger, Vyacheslav Yurchenko, Julius Lukeš
Year: 2021, TRENDS PARASITOL
journal article

SARS-CoV-2 hot-spot mutations are significantly enriched within inverted repeats and CpG island loci
Pratik Goswami, Martin Bartas, Matej Lexa, Natalia Bohalova, Adriana Volná, Jiří Červeň, Veronika Červeňová, Petr Pečinka, Vladimír Špunda, Miroslav Fojta, Václav Brázda
Year: 2021, BRIEFINGS IN BIOINFORMATICS
journal article

Settling the identity and phylogenetic position of the psychrotolerant green algal genus Coleochlamys (Trebouxiophyceae)
Dovilé Barcyté, Ladislav Hodač, Marek Eliáš
Year: 2021, PHYCOLOGIA
journal article

Settling the identity and phylogenetic position of the psychrotolerant green algal genus Coleochlamys (Trebouxiophyceae)
Dovilé Barcyté, Ladislav Hodač, Marek Eliáš
Year: 2021, PHYCOLOGIA
journal article

The Changes in the p53 Protein across the Animal Kingdom Point to Its Involvement in Longevity
Martin Bartas, Václav Brázda, Adriana Volná, Jiří Červeň, Petr Pečinka, Joanna Zawacka-Pankau
Year: 2021, INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES
journal article

The effects of genetic drift and genomic selection on differentiation and local adaptation of the introduced populations of Aedes albopictus in southern Russia
Evgenii A. Konorov, Vyacheslav Yurchenko, Ivan Patraman, Alexander Lukashev, Nadezhda Oyun
Year: 2021, PeerJ
journal article

The Mastigamoeba balamuthi Genome and the Nature of the Free-Living Ancestor of Entamoeba
Vojtěch Žárský, Vladimír Klimeš, Jan Pačes, Čestmír Vlček, Miluše Hradilová, Vladimír Beneš, Eva Nývltová, Ivan Hrdý, Jan Pyrih, Jan Mach, Lael Barlow, Courtney W. Stairs, Eme Laura, Neil Hall, Marek Eliáš, Joel B. Dacks, Andrew Roger, Jan Tachezy
Year: 2021, MOL BIOL EVOL
journal article

The Remarkable Metabolism of Vickermania ingenoplastis: Genomic Predictions
Fred R. Opperdoes, Anzhelika Butenko, Alexandra Zakharova, Evgeny S. Gerasimov, Sara L. Zimmer, Julius Lukeš, Vyacheslav Yurchenko
Year: 2021, PATHOGENS
journal article

Tracing dsDNA Virus-Host Coevolution through Correlation of Their G-Quadruplex-Forming Sequences
Natália Bohálová, Alessio Cantara, Martin Bartas, Patrik Kaura, Jiří Šťastný, Petr Pečinka, Miroslav Fojta, Václav Brázda
Year: 2021, International Journal of Molecular Sciences
journal article

Transcriptomic and Proteomic Analysis of Drought Stress Response in Opium Poppy Plants during the First Week of Germination
Kristýna Kundrátová, Martin Bartas, Petr Pečinka, Ondřej Hejna, Andrea Rychlá, Vladislav Čurn, Jiří Červeň
Year: 2021, Plants-Basel
journal article

Unexpected diversity in the sponge-associated shrimps Onycocaridella Bruce, 1981 (Crustacea: Decapoda: Palaemonidae) revealed by bulk collecting techniques and molecular tools
Anna Šobáňová, Zdeněk Ďuriš
Year: 2021, Invertebrate Systematics
journal article

Unexpected diversity in the sponge-associated shrimps Onycocaridella Bruce, 1981 (Crustacea: Decapoda: Palaemonidae) revealed by bulk collecting techniques and molecular tools.
Anna ŠOBÁŇOVÁ, Zdeněk Ďuriš
Year: 2021, Invertebrate systematics
journal article

Variability and classification of Carpathian calcium-rich fens: breaking the state borders
Michal Hájek, Petra Hájková, Irina Goia, Daniel Dite, Vítězslav Plášek
Year: 2021, PRESLIA
journal article


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