UO > About > Organizational Structure > Faculties & Institutes > Faculty of Science > About > Organizational Structure > Departments & Centres > Environmental Center

Marek Eliáš

Projects

Academic degree, name, surname:

prof. Mgr. Marek Eliáš, Ph.D.

Room, floor, building:

L 245, Building L

Position:

Head of Section

Research interests and teaching:

Department (Faculty):

Department of Biology and Ecology (Faculty of Science)
Environmental Center (Faculty of Science)

Phone number, mobile:

+420 553 46 2280

E-mail:

Personal website:

https://web.osu.cz/~Elias/

No record found.

A DNA polymerases localized in organelles: Evolutionary contribution of bacteria including the proto-mitochondrion

Ryo Harada, Yoshihisa Hirakawa, Akinori Yabuki, Eunsoo Kim, Euki Yazaki, Ryoma Kamikawa, Kentaro Nakano, Marek Eliáš, Yuji Inagaki ... other authors

Year: 2024, MOLECULAR BIOLOGY AND EVOLUTION

journal article

A Novel Group of Dynamin-Related Proteins Shared by Eukaryotes and Giant Viruses Is Able to Remodel Mitochondria From Within the Matrix

Sheikh Shaghayegh, Tomáš Pánek, Ondřej Gahura, Jiří Tyc, Kristína Záhonová, Julius Lukes, Marek Eliáš, Hassan Hashimi ... other authors

Year: 2023, MOL BIOL EVOL

journal article

A single cryptomonad cell harbors a complex community of organelles, bacteria, a and selfish elements

Emma E. George, Dovilé Barcyté, Gordon Lax, Sam Livingston, Daria Tashyreva, Filip Husnik, Julius Lukeš, Marek Eliáš, Patrick J. Keeling ... other authors

Year: 2023, CURR BIOL

journal article

An evolutionary perspective on Arf family GTPases

Catherine L Jackson, Julie Menetrey, Silvia Mandeep, Joel B. Dacks, Marek Eliáš

Year: 2023, CURRENT OPINION IN CELL BIOLOGY

journal article

Genomics of Preaxostyla Flagellates Illuminates the Path Towards the Loss of Mitochondria

Lukas V. F. Novak, Sebastian C. Treitli, Jan Pyrih, Pawel Halakuc, Shweta V. Pipaliya, Vojtěch Vacek, Ondrej Brzon, Petr Soukal, Laura Eme, Joel B. Dacks, Anna Karnkowska, Marek Eliáš, Vladimir Hampl ... other authors

Year: 2023, PLOS GENETICS

journal article

Hydrocytium expands the phylogenetic, morphological, and genomic diversity of the poorly known green algal order Chaetopeltidales

Dovilé Barcyté, Marek Eliáš

Year: 2023, AMERICAN JOURNAL OF BOTANY

journal article

A new lineage of non-photosynthetic green algae with extreme organellar genomes

Tomáš Pánek, Dovilé Barcyté, Sebastian C. Treitli, Kristína Záhonová, Martin Sokol, Tereza Ševčíková, Eliska Zadrobilkova, Karin Jaške, Naoji Yubuki, Ivan Cepicka, Marek Eliáš ... other authors

Year: 2022, BMC BIOL

journal article

Evidence for an independent hydrogenosome-to-mitosome transition in the CL3 lineage of fornicates

Romana Vargová, Pavla Hanouskova, Jana Salamonová, David ŽIHALA, Jeffrey D. Silberman, Marek Eliáš, Ivan Cepicka ... other authors

Year: 2022, Frontiers in Microbiology

journal article

Phylogenetic profiling and cellular analyses of ARL16 reveal roles in traffic of IFT140 and INPP5E

Skylar I. Dewees, Romana Vargová, Katherine R. Hardin, Rachel E. Turn, Saroja Devi, Joshua Linnert, Uwe Wolfrum, Tamara Caspary, Marek Eliáš, Richard A. Kahn ... other authors

Year: 2022, MOL BIOL CELL

journal article

Redefining Chlorobotryaceae as one of the principal and most diverse lineages of eustigmatophyte algae

Dovilé Barcyté, Martina Zátopková, Yvonne Nemcova, Michal Richtář, Tatiana Yurchenko, Karin Jaške, Karen P. Fawley, Pavel Skaloud, Tereza Ševčíková, Marvin W. Fawley, Marek Eliáš ... other authors

Year: 2022, MOL PHYLOGENET EVOL

journal article

When you Like Other Algae: Adglutina synurophila gen. et sp. nov. (Moewusinia, Chlorophyceae), a Clingy Green Microalga Associated with Synura Colonies

Dovilé Barcyté, Martin Pusztai, Pavel Skaloud, Marek Eliáš

Year: 2022, PROTIST

journal article

A Eukaryote-Wide Perspective on the Diversity and Evolution of the ARF GTPase Protein Family

Romana Vargová, Jeremy G. Wideman, Romain Derelle, Vladimír Klimeš, Richard A. Kahn, Joel B. Dacks, Marek Eliáš ... other authors

Year: 2021, GENOME BIOLOGY AND EVOLUTION

journal article

Analysis of diverse eukaryotes suggests the existence of an ancestral mitochondrial apparatus derived from the bacterial type II secretion system

Lenka Horváthová, Tomáš Pánek, Vladimír Klimeš, Franz B. Lang, Marek Eliáš

Year: 2021, NATURE COMMUNICATIONS

journal article

Expansion and transformation of the minor spliceosomal system in the slime mold Physarum polycephalum

Graham E. Larue, Marek Eliáš, Scott W. Roy

Year: 2021, CURR BIOL

journal article

Genomics and transcriptomics yields a system-level view of the biology of the pathogen Naegleria fowleri

Emily K. Herman, Alex Greninger, Mark van der Giezen, Michael L. Ginger, Inmaculada Ramirez-Macias, Haylea C. Miller, Matthew J. Morgan, Anastasios D. Tsaousis, Katrina Velle, Romana Vargová, Kristýna Záhonová, Sebastian Rodrigo Najle, Georgina MacIntyre, Norbert Muller, Mattias Wittwer, Denise C. Zysset-Burri, Marek Eliáš, Claudio H. Slamovits, Matthew T. Weirauch, Lillian Fritz-Laylin, Francine Marciano-Cabral, Geoffrey J. Puzon, Tom Walsh, Charles Chiu, Joel B. Dacks ... other authors

Year: 2021, BMC BIOLOGY

journal article

Characiopsis Borzì belongs to the Eustigmatophyceae

Amaral Raquel, Tereza Ševčíková, Marek Eliáš, Santos Lilia M. A.

Year: 2021, EUR J PHYCOL

journal article

CharaciopsisBorzi belongs to the Eustigmatophyceae

Raquel Amaral, Tereza Ševčíková, Marek Eliáš, Lilia M. A. Santos

Year: 2021, EUR J PHYCOL

journal article

Monodopsis and Vischeria genomes shed new light on the biology of eustigmatophyte algae

Hsiao-Pei Yang, Marius Wenzel, Duncan A. Hauser, Jessica M. Nelson, Xia Xu, Marek Eliáš, Fay-Wei Li ... other authors

Year: 2021, Genome Biology and Evolution

journal article

Olisthodiscus represents a new class of Ochrophyta

Dovilé Barcyté, Wenche Eikrem, Anette Engesmo, Sergio Seoane, Jens Wohlmann, Aleš Horák, Tatiana Yurchenko, Marek Eliáš ... other authors

Year: 2021, J PHYCOL

journal article

PhyloFisher: A phylogenomic package for resolving eukaryotic relationships

Alexander K. Tice, David ŽIHALA, Tomáš Pánek, Robert E. Jones, Eric D. Salomaki, Serafim Nenarokov, Fabien Burki, Marek Eliáš, Laura Eme, Andrew J. Roger, Antonis Rokas, Xing-Xing Shen, Jurgen F. H. Strassert, Martin Kolísko, Matthew W. Brown ... other authors

Year: 2021, PLOS BIOL

journal article

Protist diversity: Novel groups enrich the algal tree of life

Marek Eliáš

Year: 2021, CURR BIOL

journal article

Settling the identity and phylogenetic position of the psychrotolerant green algal genus Coleochlamys (Trebouxiophyceae)

Dovilé Barcyté, Ladislav Hodač, Marek Eliáš

Year: 2021, PHYCOLOGIA

journal article

The Mastigamoeba balamuthi Genome and the Nature of the Free-Living Ancestor of Entamoeba

Vojtěch Žárský, Vladimír Klimeš, Jan Pačes, Čestmír Vlček, Miluše Hradilová, Vladimír Beneš, Eva Nývltová, Ivan Hrdý, Jan Pyrih, Jan Mach, Lael Barlow, Courtney W. Stairs, Eme Laura, Neil Hall, Marek Eliáš, Joel B. Dacks, Andrew Roger, Jan Tachezy ... other authors

Year: 2021, MOL BIOL EVOL

journal article

Vestiges of the Bacterial Signal Recognition Particle-Based Protein Targeting in Mitochondria

Jan Pyrih, Tomáš Pánek, Ignacio Miguel Durante, Vendula Rašková, Kristýna Cimrhanzlová, Eva Kriegova, Anastasios D. Tsaousis, Marek Eliáš, Julius Lukeš ... other authors

Year: 2021, MOL BIOL EVOL

journal article

Evolution of the genetic code in the mitochondria of Labyrinthulea (Stramenopiles)

David ŽIHALA, Jana Salamonová, Marek Eliáš

Year: 2020, MOL PHYLOGENET EVOL

journal article

Metabolic quirks and the colourful history of the Euglena gracilis secondary plastid

AMGN Vanclova, M Zoltner, S Kelly, P Soukal, Kristína Záhonová, Z Fussy, TE Ebenezer, EL Dobakova, Marek Eliáš, J Lukes, MC Field, V Hampl ... other authors

Year: 2020, NEW PHYTOLOGIST

journal article

Returning to the fold for lessons in mitochondrial crista diversity and evolution

Tomáš Pánek, Marek Eliáš, M Vancova, J Lukes, H Hashimi

Year: 2020, CURR BIOL

journal article

The Cryptic Plastid of Euglena longa Defines a New Type of Nonphotosynthetic Plastid Organelle

Zoltán Füssy, Kristína Záhonová, Aleš Tomčala, Juraj Krajčovič, Vyacheslav Yurchenko, Miroslav Oborník, Marek Eliáš ... other authors

Year: 2020, mSphere

journal article

The draft nuclear genome sequence and predicted mitochondrial proteome of Andalucia godoyi, a protist with the most gene-rich and bacteria-like mitochondrial genome

MW Gray, G Burger, R Derelle, Vladimír Klimeš, MM Leger, M Sarrasin, C Vlcek, AJ Roger, Marek Eliáš, BF Lang ... other authors

Year: 2020, BMC BIOLOGY

journal article

Toward Modern Classification of Eustigmatophytes, Including the Description of Neomonodaceae Fam. Nov. and Three New Genera

Raquel Amaral, Karen P. Fawley, Yvonne Němcová, Tereza Ševčíková, Anna Lukešová, Marvin W. Fawley, Lília M. A. Santos, Marek Eliáš ... other authors

Year: 2020, J PHYCOL

journal article

Evolution and Unprecedented Variants of the Mitochondria! Genetic Code in a Lineage of Green Algae

David ŽIHALA, Marek Eliáš

Year: 2019, Genome Biology and Evolution

journal article

Plastid Genomes and Proteins Illuminate the Evolution of Eustigmatophyte Algae and Their Bacterial Endosymbionts

Tereza Ševčíková, Tatiana Yurchenko, KP Fawley, R Amaral, H Strnad, LMA Santos, MV Fawley, Marek Eliáš ... other authors

Year: 2019, Genome biology and evolution

journal article

The oxymonad genome displays canonical eukaryotic complexity in the absence of a mitochondrion

A. Karnkowska, S. C. Treitli, O. Brzoň, L. Novák, V. Vacek, P. Soukal, L. D. Barlow, E. K. Herman, S. V. Pipaliya, Tomáš Pánek, David ŽIHALA, Romana Petrželková, Anzhelika Butenko, L. Eme, C. W. Stairs, A. J. Roger, Marek Eliáš, J. B. Dacks, V. Hampl ... other authors

Year: 2019, Molecular Biology and Evolution

journal article

Was the Mitochondrion Necessary to Start Eukaryogenesis?

V Hampl, I Cepicka, Marek Eliáš

Year: 2019, Trends in microbiology

journal article

A gene transfer event suggests a long-term partnership between eustigmatophyte algae and a novel lineage of endosymbiotic bacteria

Tatiana Yurchenko, Tereza Ševčíková, P Přibyl, K El Karkouri, Vladimír Klimeš, R Amaral, Veronika Zbránková, E Kim, D Raoult, LMA Santos, Marek Eliáš ... other authors

Year: 2018, ISME JOURNAL

journal article

Extensive molecular tinkering in the evolution of the membrane attachment mode of the Rheb GTPase

Kristína Záhonová, Romana Petrželková, M Valach, E Yazaki, DV Tikhonenkov, Anzhelika Butenko, J Janouškovec, Š Hrdá, Vladimír Klimeš, G Burger, Y Inagaki, PJ Keeling, V Hampl, Pavel Flegontov, Vyacheslav Yurchenko, Marek Eliáš ... other authors

Year: 2018, SCIENTIFIC REPORTS

journal article

Peculiar features of the plastids of the colourless alga Euglena longa and photosynthetic euglenophytes unveiled by transcriptome analyses

Kristína Záhonová, Z Füssy, E Birčák, AMG Novák Vanclová, Vladimír Klimeš, M Vesteg, J Krajčovič, M Oborník, Marek Eliáš ... other authors

Year: 2018, SCIENTIFIC REPORTS

journal article

Eustigmatophyceae

Marek Eliáš, R. Amaral , K. P. Fawley , M. W. Fawley , Y. Němcová , J. Neustupa , P. Přibyl , L. M. A. Santos , Tereza Ševčíková ... other authors

Year: 2017, Springer International Publishing

specialist book chapter

Evolution of the ARF-related family of GTPases: new ancestral types and a plethora of novel group-specific forms revealed by a dense sampling of protist genomes

Marek Eliáš, Jeremy G. Wideman

Year: 2017

presentations (congresses, symposia, conferences, workshops)

Evolution of the ARF-related family of GTPases: new ancestral types and a plethora of novel group-specific forms revealed by a dense sampling of protist genomes

Romana Petrželková, Marek Eliáš, Jeremy Wideman

Year: 2017

presentations (congresses, symposia, conferences, workshops)

Extreme genome diversity in the hyper-prevalent parasitic eukaryote Blastocystis

E. Gentekaki, B.A. Curtis, C.W. Stairs, Vladimír Klimeš, Marek Eliáš, D.E. Salas-Leiva, E.K. Herman, L. Eme, M.C. Arias, B. Henrissat, F. Hilliou, M.J. Klute, H. Suga, S.B. Malik, A.W. Pightling, M. Kolisko, R.A. Rachubinski, A. Schlacht, D.M. Soanes, A.D. Tsaousis, J.M. Archibald, S.G. Ball, J.B. Dacks, C.G. Clark, M. van der Giezen, A.J. Roger ... other authors

Year: 2017, PLOS BIOLOGY

journal article

Nuclear genetic codes with a different meaning of the UAG and the UAA codon

Tomáš Pánek, David ŽIHALA, Martin Sokol, R. Derelle, Vladimír Klimeš, M. Hradilova, E. Zadrobilkova, E. Susko, A.J. Roger, I. Cepicka, Marek Eliáš ... other authors

Year: 2017, BMC BIOLOGY

journal article

A Comparative Analysis of Mitochondrial Genomes in Eustigmatophyte Algae

Tereza Ševčíková, Vladimír Klimeš, Veronika Zbránková, H. Strnad, M. Hroudova, C. Vlcek, Marek Eliáš ... other authors

Year: 2016, GENOME BIOLOGY AND EVOLUTION

journal article

A Eukaryote without a Mitochondrial Organelle

A. Karnkowska, V. Vacek, Z. Zubacova, S.C. Treitli, Romana Petrželková, L. Eme, L. Novak, V. Zarsky, L.D. Barlow, E.K. Herman, P. Soukal, M. Hroudova, P. Dolezal, C. W. Stairs, A. J. Roger, Marek Eliáš, J. B. Dacks, C. Vlcek, V. Hampl ... other authors

Year: 2016, CURRENT BIOLOGY

journal article

A paneukaryotic genomic analysis of the small GTPase RABL2 underscores the significance of recurrent gene loss in eukaryote evolution

Marek Eliáš, Vladimír Klimeš, R. Derelle, Romana Petrželková, J. Tachezy

Year: 2016, BIOLOGY DIRECT

journal article

An Unprecedented Non-canonical Nuclear Genetic Code with All Three Termination Codons Reassigned as Sense Codons

Kristína Záhonová, Aleksei Kostygov, Tereza Ševčíková, Vyacheslav Yurchenko, Marek Eliáš

Year: 2016, CURRENT BIOLOGY

journal article

Expansion of Signal Transduction Pathways in Fungi by Extensive Genome Duplication

L. M. Corrochano, A. Kuo, M. Marcet-Houben, S. Polaino, A. Salamov, J. M. Villalobos-Escobedo, J. Grimwood, M. I. Alvarez, J. Avalos, D. Bauer, E. P. Benito, I. Benoit, G. Burger, L. P. Camino, D. Canovas, E. Cerda-Olmedo, J. F. Cheng, A. Dominguez, Marek Eliáš, A.P. Eslava, F. Glaser, G. Gutierrez, J. Heitman, B. Henrissat, E. A. Iturriaga, B. F. Lang, J. L. Lavin, S. C. Lee, W. J. Li, E. Lindquist, S. Lopez-Garcia, E. M. Luque, A. T. Marcos, J. Martin, K. McCluskey, H. R. Medina, A. Miralles-Duran, A. Miyazaki, E. Munoz-Torres, J. A. Oguiza, R. A. Ohm, M. Olmedo, M. Orejas, L. Ortiz-Castellanos, A. G. Pisabarro, J. Rodriguez-Romero, J. Ruiz-Herrera, R. Ruiz-Vazquez, C. Sanz, W. Schackwitz, M. Shahriari, E. Shelest, F. Silva-Franco, D. Soanes, K. Syed, V. G. Tagua, N. J. Talbot, M. R. Thon, H. Tice, R. P. de Vries, A. Wiebenga, J. S. Yadav, E. L. Braun, S. E. Baker, V. Garre, J. Schmutz, B. A. Horwitz, S. Torres-Martinez, A. Idnurm, A. Herrera-Estrella, T. Gabaldon, I. V. Grigoriev ... other authors

Year: 2016, CURRENT BIOLOGY

journal article

Genome of Leptomonas pyrrhocoris: a high-quality reference for monoxenous trypanosomatids and new insights into evolution of Leishmania

Pavel Flegontov, Anzhelika Butenko, S. Firsov, Natalia Kraeva, Marek Eliáš, M. C. Field, D. Filatov, O. Flegontova, E. S. Gerasimov, J. Hlavacova, Aygul ISHEMGULOVA, A. P. Jackson, S. Kelly, Aleksei Kostygov, M.D. Logacheva, D. A. Maslov, F. R. Opperdoes, A. OReilly, J. Sadlova, Tereza Ševčíková, D. Venkatesh, C. Vlcek, P. Volf, J. Votypka, Kristína Záhonová, Vyacheslav Yurchenko, J. Lukes ... other authors

Year: 2016, SCIENTIFIC REPORTS

journal article

Ras superfamily GTPases in Microsporidia: Extremely divergent genes in extremely divergent parasites

Romana Petrželková, Marek Eliáš

Year: 2016

presentations (congresses, symposia, conferences, workshops)

RuBisCO in Non-Photosynthetic Alga Euglena longa: Divergent Features, Transcriptomic Analysis and Regulation of Complex Formation

Kristína Záhonová, Z. Fussy, M. Obornik, Marek Eliáš, Vyacheslav Yurchenko

Year: 2016, PLOS ONE

journal article

The high complexity and dynamic evolution of the Ras superfamily of GTPases in Naegleria

Romana Petrželková, Marek Eliáš, Emily Herman, Joel B. Dacks

Year: 2016

presentations (congresses, symposia, conferences, workshops)

The plastid genome of some eustigmatophyte algae harbours a bacteria-derived six-gene cluster for biosynthesis of a novel secondary metabolite

Tatiana Yurchenko, Tereza Ševčíková, H. Strnad, Anzhelika Butenko, Marek Eliáš

Year: 2016, OPEN BIOLOGY

journal article

An ancestral bacterial division system is widespread in eukaryotic mitochondria

M.M. Leger, M. Petru, V. Zarsky, L. Eme, C. Vlcek, T. Harding, B.F. Lang, Marek Eliáš, P. Dolezal, A.J. Roger ... other authors

Year: 2015, PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

journal article

Bacterial proteins pinpoint a single eukaryotic root

R. Derelle, G. Torruella, Vladimír Klimeš, H. Brinkmann, E. Kim, C. Vlcek, B.F. Lang, Marek Eliáš ... other authors

Year: 2015, PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

journal article

Contrasting Patterns in the Evolution of the Rab GTPase Family in Archaeplastida

Romana Petrželková, Marek Eliáš

Year: 2015

presentations (congresses, symposia, conferences, workshops)

Identification and annotation of the Ras GTPase superfamily genes in Microsporidia: challenges of studying extremely divergent genomes

Romana Petrželková, Marek Eliáš

Year: 2015

presentations (congresses, symposia, conferences, workshops)

Sex is a ubiquitous, ancient, and inherent attribute of eukaryotic life

D. Speijer, J. Lukes, Marek Eliáš

Year: 2015, PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

journal article

Updating algal evolutionary relationships through plastid genome sequencing: did alveolate plastids emerge through endosymbiosis of an ochrophyte?

Tereza Ševčíková, A. Horak, Vladimír Klimeš, Veronika Zbránková, E. Demir-Hilton, S. Sudek, J. Jenkins, J. Schmutz, P. Pribyl, J. Fousek, C. Vlcek, B.F. Lang, M. Obornik, A.Z. Worden, Marek Eliáš ... other authors

Year: 2015, Scientific Reports

journal article

A large number of nuclear genes in the human parasite Blastocystis require mRNA polyadenylation to create functional termination codons

Vladimír Klimeš, E. Gentekaki , A. J. Roger , Marek Eliáš

Year: 2014, Genome Biology and Evolution

journal article

A small portion of plastid transcripts is polyadenylated in the flagellate Euglena gracilis

Kristína Záhonová, L. Hadariová , R. Vacula , Vyacheslav Yurchenko, Marek Eliáš, J. Krajčovič , Matej Vesteg ... other authors

Year: 2014, FEBS LETTERS

journal article

Contrasting patterns in the evolution of the Rab GTPase family in Archaeplastida

Romana Petrželková, Marek Eliáš

Year: 2014, Acta Societatis Botanicorum Poloniae

journal article

Dissecting a Hidden Gene Duplication: The Arabidopsis thaliana SEC10 Locus

N. Vukašinović , F. Cvrčková , Marek Eliáš, R. Cole , J.E. Fowler , V. Žárský , L. Synek ... other authors

Year: 2014, PLOS ONE

journal article

Exploring the Ras Superfamily of GTPaes in Protist Genomes

Romana Petrželková, Anna Karnkowska, Romain Derelle, Vladimír Hampl, B. Franz Lang, Čestmír Vlček, Marek Eliáš ... other authors

Year: 2014

presentations (congresses, symposia, conferences, workshops)

The diversity and phylogeny of the commercially important algal class Eustigmatophyceae, including the new clade Goniochloridales

K.P. Fawley , Marek Eliáš, M. W. Fawley

Year: 2014, JOURNAL OF APPLIED PHYCOLOGY

journal article

A broad phylogenetic survey unveils the diversity and evolution of telomeres in eukaryotes

J. Fulnečková, T. Ševčíková, J. Fajkus, A. Lukešová, M. Lukeš, Č. Vlček, B.F. Lang, E. Kim, Marek Eliáš, E. Sýkorová ... other authors

Year: 2013, Genome Biology and Evolution

journal article

A case of taxonomic inflation in coccoid algae: Ellipsoidion parvum and Neocystis vischeri are conspecific with Neocystis (=Nephrodiella) brevis (Chlorophyta, Trebouxiophyceae)

Marek Eliáš, J. Neustupa, M. Pažoutová, P. Škaloud

Year: 2013, Phytotaxa

journal article

Ancient complexity, opisthokont plasticity, and discovery of the 11th subfamily of Arf GAP proteins

Alexander Schlacht, Kevin Mowbrey, Marek Eliáš, Richard A. Khan, Joel B. Dacks

Year: 2013, TRAFFIC

journal article

Genome structure and metabolic features in the red seaweed Chondrus crispus shed light on evolution of the Archaeplastida

J. Collén, B. Porcel, W. Carré, S. Ball, C. Chaparro, T. Tonon, T. Barbeyron, G. Michel, B. Noel, K. Valentin, Marek Eliáš, F. Artiguenave, A. Arun, J.M. Aury, J.F. Barbosa-Neto, J.H. Bothwell, F.Y. Bouget, L. Brillet, F. Cabello-Hurtado, S. Capella-Gutíerrez, B. Charrier, L. Cladiere, J.M. Cock, S.M. Coelho, C. Colleoni, M. Czjzek, C. Da Silva, L. Delage, F. Denoeud, F. Deschamps, S.M. Dittami, T. Gabaldón, C.M.M. Gachon, A. Groisillier, C. Hervé, K. Jabbari, M. Katinka, B. Kloareg, N. Kowalczyk, K. Labadie, C. Leblanc, P.J. Lopez, D. McLachlan, L. Meslet-Cladiere, A. Moustafa, Z. Nehr, P. Nyval-Collén, O. Panaud, F. Partensky, J. Poulain, S.A. Rensing, S. Rousvoal, G. Samson, A. Symeonidi, J. Weissenbach, A. Zambounis, P. Wincker, C. Boyen ... other authors

Year: 2013, P NATL ACAD SCI USA

journal article

Chloropyrula uraliensis gen. et sp. nov. (Trebouxiophyceae, Chlorophyta), a new green coccoid alga with a unique ultrastructure, isolated from soil in South Urals

Lira Gaysina, Pavel Škaloud, Tereza Ševčíková, Marek Eliáš, Yvonne Němcová

Year: 2013, Journal of Systematics and Evolution

journal article

Pan genome of the phytoplankton Emiliania underpins its global distribution

B.A. Read, J. Kegel, M.J. Klute, A. Kuo, S.C. Lefebvre, F. Maumus, C. Mayer, J. Miller, A. Monier, A. Salamov, J. Young, M. Aguilar, J.M. Claverie, S. Frickenhaus, K. Gonzalez, E.K. Herman, Y.C. Lin, J. Napier, H. Ogata, A.F. Sarno, J. Shmutz, D. Schroeder, C. de Vargas, F. Verret, P. von Dassow, K. Valentin, Y. Van de Peer, G. Wheeler, A.E. Allen, K. Bidle, M. Borodovsky, C. Bowler, C. Brownlee, M. Cock, Marek Eliáš, V.N. Gladyshev, M. Groth, Ch. Guda, A. Hadaegh, M.D. Iglesias-Rodriguez, J. Jenkins, B.M. Jones, T. Lawson, F. Leese, E. Lindquist, A. Lobanov, A. Lomsadze, S.B. Malik, M.E. Marsh, L. Mackinder, T. Mock, B. Mueller-Roeber, A. Pagarete, M. Parker, I. Probert, Ch. Raines, S.A. Rensing, D.M. Riano-Pachón, S. Richier, S. Rokitta, Y. Shiraiwa, D.M. Soanes, M. van der Giezen, T.M. Wahlund, B. Williams, W. Wilson, G. Wolfe, L.L. Wurch, J.B. Dacks, Ch.F. Delwiche, S.T. Dyhrman, G. Glöckner, U. John, T. Richards, A.Z. Worden, X. Zhang, I.V. Grigoriev, H. Quesneville ... other authors

Year: 2013, NATURE

journal article

The demise of the genus Scotiellopsis Vinatzer (Chlorophyta)

V. Kaufnerová, Marek Eliáš

Year: 2013, NOVA HEDWIGIA

journal article

Algal genomes reveal evolutionary mosaicism and the fate of nucleomorphs

Bruce A. Curtis, Goro Tanifuji, Fabien Burki, Ansgar Gruber, Manuel Irimia, Shinichiro Maruyama, Maria C. Arias, Steven G. Ball, Gillian H. Gile, Yoshihisa Hirakawa, Julia F. Hopkins, Alan Kuo, Stefan A. Rensing, Jeremy Schmutz, Aikaterini Symeonidi, Marek Eliáš, Robert J. M. Eveleigh, Emily K. Herman, Mary J. Klute, Takuro Nakayama, Miroslav Oborník, Adrian Reyes-Prieto, E. Virginia Armbrust, Stephen J. Aves, Robert G. Beiko, Pedro Coutinho, Joel B. Dacks, Dion G. Durnford, Naomi M. Fast, Beverley R. Green, Cameron J. Grisdale, Franziska Hempel, Bernard Henrissat, Marc P. Höppner, Ken-Ichiro Ishida, Eunsoo Kim, Luděk Kořený, Peter G. Kroth, Yuan Liu, Shehre-Banoo Malik, Uwe G. Maier, Darcy McRose, Thomas Mock, Jonathan A. D. Neilson, Naoko T. Onodera, Anthony M. Poole, Ellen J. Pritham, Thomas A. Richards, Gabrielle Rocap, Scott W. Roy, Chihiro Sarai, Sarah Schaack, Shu Shirato, Claudio H. Slamovits, David F. Spencer, Shigekatsu Suzuki, Alexandra Z. Worden, Stefan Zauner, Kerrie Barry, Callum Bell, Arvind K. Bharti, John A. Crow, Jane Grimwood, Robin Kramer, Erika Lindquist, Susan Lucas, Asaf Salamov, Geoffrey I. McFadden, Christopher E. Lane, Patrick J. Keeling, Michael W. Gray, Igor V. Grigoriev, John M. Archibald ... other authors

Year: 2012, NATURE

journal article

Dynamic Evolution of Telomeric Sequences in the Green Algal Order Chlamydomonadales

Jana Fulnečková, Tereza Hasíková, Jiří Fajkus, Alena Lukešová, Marek Eliáš, Eva Sýkorová ... other authors

Year: 2012, Genome Biology and Evolution

journal article

Highly Dynamic Exon Shuffling in Candidate Pathogen Receptors ? What if Brown Algae Were Capable of Adaptive Immunity?

Antonios Zambounis, Marek Eliáš, Lieven Sterck, Florian Maumus, Claire M. M. Gachon

Year: 2012, MOL BIOL EVOL

journal article

Mitochondrial genomes of eustigmatophyte algae

Veronika Zbránková, Jan Fousek, Čestmír Vlček, Marek Eliáš

Year: 2012

presentations (congresses, symposia, conferences, workshops)

Rho GTPases: deciphering the evolutionary history of a complex protein family

Marek Eliáš, Francisco Rivero, Vladimír Klimeš

Year: 2012, Humana Press

specialist book chapter

Sculpting the endomembrane system in deep time: high resolution phylogenetics of Rab GTPases

Marek Eliáš, Andrew Brighouse, Carme Gabernet-Castello, Mark C. Field, Joel B. Dacks

Year: 2012, J CELL SCI

journal article

The complete mitochondrial genome sequence of the eustigmatophyte alga Trachydiscus minutus

Veronika Zbránková, Jan Fousek, Čestmír Vlček, Marek Eliáš

Year: 2012

presentations (congresses, symposia, conferences, workshops)

The complete mitochondrial genome sequence of the eustigmatophyte alga Trachydiscus minutus

Veronika Zbránková, Jan Fousek, Čestmír Vlček, Marek Eliáš

Year: 2012

presentations (congresses, symposia, conferences, workshops)

The Ectocarpus Genome and Brown Algal Genomics

J. Mark Cock, Lieven Sterck, Sophia Ahmed, Andrew E. Allen, Grigoris Amoutzias, Veronique Anthouard, François Artiguenave, Alok Arun, Jean-Marc Aury, Jonathan H. Badger, Bank Beszteri, Kenny Billiau, Eric Bonnet, John H. Bothwell, Chris Bowler, Catherine Boyen, Colin Brownlee, Carl J. Carrano, Bénédicte Charrier, Ga Youn Cho, Susana M. Coelho, Jonas Collén, Gildas Le Corguillé, Erwan Corre, Laurence Dartevelle, Corinne Da Silva, Ludovic Delage, Nicolas Delaroque, Simon M. Dittami, Sylvie Doulbeau, Marek Eliáš, Garry Farnham, Claire M. M. Gachon, Olivier Godfroy, Bernhard Gschloessl, Svenja Heesch, Kamel Jabbari, Claire Jubin, Hiroshi Kawai, Kei Kimura, Bernard Kloareg, Frithjof C. Küpper, Daniel Lang, Aude Le Bail, Rémy Luthringer, Catherine Leblanc, Patrice Lerouge, Martin Lohr, Pascal J. Lopez, Nicolas Macaisne, Cindy Martens, Florian Maumus, Gurvan Michel, Diego Miranda-Saavedra, Julia Morales, Hervé Moreau, Taizo Motomura, Chikako Nagasato, Carolyn A. Napoli, David R. Nelson, Pi Nyvall-Collén, Akira F. Peters, Cyril Pommier, Philippe Potin, Julie Poulain, Hadi Quesneville, Betsy Read, Stefan A. Rensing, Andrés Ritter, Sylvie Rousvoal, Manoj Samanta, Gaelle Samson, Declan C. Schroeder, Delphine Scornet, Béatrice Ségurens, Martina Strittmatter, Thierry Tonon, James W. Tregear, Klaus Valentin, Peter Von Dassow, Takahiro Yamagishi, Pierre Rouzé, Yves Van de Peer, Patrick Wincker ... other authors

Year: 2012, ADV BOT RES

journal article

ZOOSPOROGENESIS, MORPHOLOGY, ULTRASTRUCTURE, PIGMENT COMPOSITION, AND PHYLOGENETIC POSITION OF TRACHYDISCUS MINUTUS (EUSTIGMATOPHYCEAE, HETEROKONTOPHYTA)

Pavel Přibyl, Marek Eliáš, Vladislav Cepák, Jaromír Lukavský, Petr Kaštánek

Year: 2012, Journal of Phycology

journal article

JENUFA GEN. NOV.: A NEW GENUS OF COCCOID GREEN ALGAE (CHLOROPHYCEAE, INCERTAE SEDIS) PREVIOUSLY RECORDED BY ENVIRONMENTAL SEQUENCING

Yvonne Němcová, Marek Eliáš, Pavel Škaloud, Jiří Neustupa, Ladislav Hodač

Year: 2011, J PHYCOL

journal article

Georgia Vlahou, Marek Eliáš, Jürgen-Christoph von Kleist-Retzow, Rudolf J. Wiesner, Francisco Rivero

Year: 2011, EUR J CELL BIOL

journal article

Patterns and processes in the evolution of the eukaryotic endomembrane system

Marek Eliáš

Year: 2010, Molecular Membrane Biology

journal article

Sizing up the genomic footprint of endosymbiosis

Marek Eliáš, John M. Archibald

Year: 2009, BIOESSAYS

journal article

The RAB Family GTPase Rab1A from Plasmodium falciparum Defines a Unique Paralog Shared by Chromalveolates and Rhizaria

Marek Eliáš, Nicola J. Patron, Patrick J. Keeling

Year: 2009, J EUKARYOT MICROBIOL

journal article

výzkumný pobyt

Marek Eliáš

Year: 2003

work experience abroad

výzkumný pobyt

Marek Eliáš

Year: 1999

work experience abroad

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Abbreviation

Subject

AKTBI

Aktuální problémy biologického výzkumu

BIBUN

Biologie buňky

BIOIN

Praktický kurz bioinformatiky

BPRHU

Biologie protistů a hub

DBIIN

EVBUN

EVOBI

EVOSB

EVOSS

FYLDI

Fylogeneze a diverzita organizmů

PRS01

Specializační seminář 1

PRS02

Specializační seminář 2

PRS03

Specializační seminář 3

PRS04

Specializační seminář 4

PRS05

Specializační seminář 5

PRS06

Specializační seminář 6

PRS07

Specializační seminář 7

PRS08

Specializační seminář 8

PRS09

Specializační seminář 9

PRS10

Specializační seminář 10

PRS11

Specializační seminář 11

PRS12

Specializační seminář 12

QBSL1

Biologický seminář LS 1

QBSL2

Biologický seminář LS 2

QBSL3

Biologický seminář LS 3

QBSL4

Biologický seminář LS 4

QBSZ1

Biologický seminář ZS 1

QBSZ2

Biologický seminář ZS 2

QBSZ3

Biologický seminář ZS 3

QBSZ4

Biologický seminář ZS 4

QCII1

Článek v index. imp. časopise 1

QCII2

Článek v index. imp. časopise 2

QCII3

Článek v index. imp. časopise 3

QCIN1

Článek v index. neimp. časopise 1

QCIN2

Článek v index. neimp. časopise 2

QCIN3

Článek v index. neimp. časopise 3

QEVBU

Evoluce buňky

QEVGE

Evoluční genetika a genomika

QMOSY

Molekulární systematika

QMVK1

Akt. účast na mezinár. vědecké konf. 1

QMVK2

Akt. účast na mezinár. vědecké konf. 2

QMVK3

Akt. účast na mezinár. vědecké konf. 3

QNVK1

Akt. účast na národní vědecké konf. 1

QNVK2

Akt. účast na národní vědecké konf. 2

QNVK3

Akt. účast na národní vědecké konf. 3

QPKBI

Praktický kurz bioinformatiky

QVYC1

Výuková činnost 1

QVYC2

Výuková činnost 2

QZMVP

Zapojení do mezinárodního výzk. projektu

QZNVP

Zapojení do národního výzk. projektu

QZPD2

Zahraniční studijní pobyt dlouhodobý

QZSPD

Zahraniční studijní pobyt dlouhodobý

QZSPK

Zahraniční studijní pobyt krátkodobý

QZSPS

Zahraniční studijní pobyt střednědobý

WBEEO

Biology of endosymbionts and endosymbiot

WBINF

Bioinformatics

WBISE

Biological seminar

WBISS

Biological seminar (summer)

WBISW

Biological seminar (winter)

WEVBU

Evolution of the cell

WMOSY

Fundamentals of molecular systematics

YAPSB

Aktuální přístupy v systematické biologi

YBIBU

Biologie buňky

YBIPH

Biodiverzita protistů a hub

ZAMOS

Základy molekulární systematiky

ZAMSS

Základy molekulární systematiky

6BINF

Bioinformatika

6BPHU

Biodiverzita protistů a hub (přednáška)

7BAPR

Bakalářská práce

7BEEO

Biology of endosymbionts and endosymbiot

7BINF

7BIS1

7BIS2

7BIS3

7BPHC

Biodiverzita protistů a hub (cvičení)

7BPHP

Biodiverzita protistů a hub (přednáška)

7DIPR

Diplomová práce

7EVBU

Evoluce buňky

7EVGE

Evoluční genetika a genomika

7PBP2

Příprava bakalářské práce 2

7PDP1

Příprava diplomové práce 1

7PDP2

Příprava diplomové práce 2

7SDP1

Seminář k diplomové práci 1

7SDP2

Seminář k diplomové práci 2

7SEM1

Specializovaný diplomový seminář 1

7SEM2

Specializovaný diplomový seminář 2

7SEM3

Specializovaný diplomový seminář 3

8BIS1

8BIS2

8BIS3

8BIS4

8BIS5

8BIS6

8BIS7

8BIS8

8EVBU

8EVGE

Evoluční genetika a genomika

Author

Title

Type of thesis

Year

Žihala David

Non-standard genetic codes of protists and their evolution

Doctoral thesis

2020

Yurchenko Tatiana

Evolutionary and functional aspects of novel endosymbionts of eustigmatophyte algae related to the genus Rickettsia

Doctoral thesis

2019

Záhonová Kristína

Protists of the Euglenozoa group in the light of molecular biology and genomics

Doctoral thesis

2016

Ševčíková Tereza

New Insights Into the Evolution of Algae in Light of Genomics and Molecular Phylogenetics

Doctoral thesis

2015

Maturová Eliška

Teaching the system of organisms at grammar schools in the Czech Republic

Master's thesis

2022

Majnušová Vladislava

Searching for viruses of eustigmatophyte algae

Master's thesis

2021

Salamonová Jana

Evolution of termination codons in mitochondria of the supergroup Opisthokonta

Master's thesis

2021

Sokol Martin

Evolutionary and functional aspects of nonphotosynthetic plastids of selected eukaryotes

Master's thesis

2020

Bělicová Iveta

GTPases of the Rab family with noncanonical modes of association with membranes

Master's thesis

2016

Zátopková Martina

Molecular-phylogenetic analysis of selected coccoid algae

Master's thesis

2016

Krybusová Lucie

Evolution of the gene family of the protooncogene p21ras

Master's thesis

2013

Kufová Zuzana

Diversity and phylogeny of green algae related to the genus Stichococcus

Master's thesis

2013

Kukeňová Barbora

Comparative analysis of proteins of the endomembrane system in protists

Master's thesis

2013

Majnušová Vladislava

Diversity and evolution of giant viruses of algae

Bachelor's thesis

2019

Maturová Eliška

Evolution of mitochondrial systems for protein transport

Bachelor's thesis

2019

Salamonová Jana

The Last Eukaryotic Common Ancestor

Bachelor's thesis

2019

Richtář Michal

Methods of targeted genetic manipulations in algae

Bachelor's thesis

2017

Sliwková Iveta

Diversity and function of nonphotosynthetic plastids

Bachelor's thesis

2015

Nytrová Barbora

Bacterial endosymbionts of protists

Bachelor's thesis

2014

Organellar translation as an evolutionary playground

Main solver

prof. Mgr. Marek Eliáš, Ph.D.

Period

1/2023 - 12/2025

Provider

Standardní projekt GA ČR

State

solved

Pushing the frontiers of plastid biology research by studying secondarily non-photosynthetic protists

Main solver

prof. Mgr. Marek Eliáš, Ph.D.

Period

1/2023 - 12/2025

Provider

Standardní projekt GA ČR

State

solved

Functional exploration of a novel cellular system critical for understanding the origin and early evolution of the mitochondrion

Main solver

prof. Mgr. Marek Eliáš, Ph.D.

Period

1/2022 - 12/2024

Provider

Standardní grantový projekt GA AV

State

solved

Molecular Mechanisms and evolution of RNA polyadenylation in euglenophyte plastids

Main solver

prof. Mgr. Marek Eliáš, Ph.D.

Period

1/2021 - 12/2023

Provider

Katedra biologie a ekologie, Standardní grantový projekt GA AV

State

finished

The eustigmatophyte endosphere: intracellular bacteria and viruses in the life and evolution of a model group of algae

Main solver

prof. Mgr. Marek Eliáš, Ph.D.

Period

1/2020 - 12/2022

Provider

Standardní projekt GA ČR

State

finished

63. ročník konference České algologické společnosti

Main solver

prof. Mgr. Marek Eliáš, Ph.D.

Period

8/2022 - 9/2022

Provider

Moravskoslezský kraj, Statutární město Ostrava

State

finished

Bioinformatická analýza proteinů - OBJEDNÁVKA

Main solver

prof. Mgr. Marek Eliáš, Ph.D.

Period

3/2021 - 6/2021

Provider

Smluvní výzkum

State

solved

Evolution and fate of endosymbiotic organelles in stramenopiles

Main solver

prof. Mgr. Marek Eliáš, Ph.D.

Period

1/2018 - 12/2020

Provider

Katedra biologie a ekologie, Standardní projekt GA ČR

State

finished

Non-standard genetic codes in protists and their evolution

Main solver

prof. Mgr. Marek Eliáš, Ph.D.

Period

1/2018 - 12/2020

Provider

Katedra biologie a ekologie, Standardní projekt GA ČR

State

finished

Organizace Ústředního kola 53. ročníku Biologické olympiády

Main solver

prof. Mgr. Marek Eliáš, Ph.D.

Period

1/2019 - 12/2019

Provider

Moravskoslezský kraj

State

finished

The dark side of plastid biology: evolution and function of leucoplasts in algae

Main solver

prof. Mgr. Marek Eliáš, Ph.D.

Period

1/2017 - 12/2019

Provider

Standardní projekt GA ČR

State

finished

The Algal Microbiome: Friends and Foes

Main solver

prof. Mgr. Marek Eliáš, Ph.D.

Period

1/2015 - 12/2018

Provider

Rámcové programy EU

State

finished

Nové směry výzkumu v Life Science Research Centre

Main solver

prof. Mgr. Marek Eliáš, Ph.D.

Period

1/2015 - 12/2017

Provider

Rozvojové programy MŠMT

State

finished

Taxonomically broad genomic study of oxymonads - eukaryotes without mitochondria

Main solver

prof. Mgr. Marek Eliáš, Ph.D.

Period

1/2015 - 12/2017

Provider

Standardní projekt GA ČR

State

finished

Inovace a internacionalizace výuky vybraných předmětů na Katedře biologie a ekologie PřF OU v Ostravě

Main solver

prof. Mgr. Marek Eliáš, Ph.D.

Period

1/2016 - 12/2016

Provider

Institucionální podpora

State

finished

Unravelling the early evolution of the eukaryotic cell through exploring the genomes of the eukaryotic superphylum Discoba

Main solver

prof. Mgr. Marek Eliáš, Ph.D.

Period

2/2013 - 12/2016

Provider

Standardní projekt GA ČR

State

finished

Evolution and function of GTPases of the Ras superfamily in protist organisms

Main solver

prof. Mgr. Marek Eliáš, Ph.D.

Period

1/2014 - 12/2015

Provider

Specifický VŠ výzkum

State

finished

A genomic approach to unravelling the biology and evolution of eustigmatophyte algae

Main solver

prof. Mgr. Marek Eliáš, Ph.D.

Period

2/2013 - 12/2015

Provider

Standardní projekt GA ČR

State

finished

Stabilizace Life Science Research Centre na Ostravské Univerzitě v Ostravě v roce 2015

Main solver

prof. Mgr. Marek Eliáš, Ph.D.

Period

12/2014 - 12/2015

Provider

Katedra biologie a ekologie, Projekty podporované z rozpočtu měst krajských úřadů

State

finished

Posílení a rozšíření Life Science Research Centre na Ostravské Univerzitě v Ostravě

Main solver

prof. Mgr. Marek Eliáš, Ph.D.

Period

1/2013 - 12/2014

Provider

Katedra biologie a ekologie, Projekty podporované z rozpočtu měst krajských úřadů

State

finished

Dotační titul 3

Main solver

prof. Mgr. Marek Eliáš, Ph.D.

Period

1/2013 - 9/2014

Provider

Katedra biologie a ekologie, Projekty podporované z rozpočtu měst krajských úřadů

State

finished

Vybudování transkriptomické laboratoře na Ostravské Univerzitě v Ostravě

Main solver

prof. Mgr. Marek Eliáš, Ph.D.

Period

1/2013 - 9/2014

Provider

Katedra biologie a ekologie, Projekty podporované z rozpočtu měst krajských úřadů

State

finished

Improvement of cooperation in Visegrad region in research of euglenid flagellates

Main solver

prof. Mgr. Marek Eliáš, Ph.D.

Period

11/2012 - 10/2013

Provider

Katedra biologie a ekologie

State

finished

Podpora vědy a výzkumu v MSK 2012 - Dotační titul 5

Main solver

prof. Mgr. Marek Eliáš, Ph.D.

Period

1/2012 - 9/2013

Provider

Katedra fyzické geografie a geoekologie, Projekty podporované z rozpočtu měst krajských úřadů

State

finished

The Ras superfamily of GTPases and the evolution of the eukaryotic cell

Main solver

prof. Mgr. Marek Eliáš, Ph.D.

Period

1/2011 - 12/2012

Provider

Standardní projekt GA ČR

State

finished

Organelární genomika eustigmatofytních řas

Main solver

prof. Mgr. Marek Eliáš, Ph.D.

Period

1/2012 - 12/2012

Provider

Specifický VŠ výzkum

State

finished

Vytvoření předmětu Základy molekulární systematiky na Přírodovědecké fakultě Ostravské Univerzity v Ostravě

Main solver

prof. Mgr. Marek Eliáš, Ph.D.

Period

1/2012 - 12/2012

Provider

Fond rozvoje vysokých škol

State

finished

Marek Eliáš

Basic information

CV

Publications

Teaching

Supervised theses

Projects

Environmental Center