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UO > About > Organizational Structure > Faculties & Institutes > Faculty of Science > About > Organizational Structure > Departments & Centres > Department of Biology and Ecology

Pavel Flegontov


Academic degree, name, surname:
M.Sc. Pavel Flegontov, Ph.D.
Room, floor, building:
Position:
Research interests and teaching:
Department (Faculty):
Katedra biologie a ekologie (Přírodovědecká fakulta)
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No record found.



Performance of qpAdm-based screens for genetic admixture on graph–shaped histories and stepping stone landscapes
Olga Flegontova, Ulas Isildak, Eren Yüncü, Matthew P Williams, Christian D Huber, Jan Kočí, Leonid Viazov, Piya Changmai, Pavel Flegontov ... other authors
Year: 2025, GENETICS
journal article
 
Modeling of African population history using f-statistics is biased when applying all previously proposed SNP ascertainment schemes
Pavel Flegontov, Ulaş Işildak, Robert Maier, Eren Yüncü, Piya Changmai, David Reich ... other authors
Year: 2023, PLoS Genetics
journal article
 
On the limits of fitting complex models of population history to f-statistics
Robert Maier, Pavel Flegontov, Olga Flegontova, Ulaş Işildak, Piya Changmai, David Reich ... other authors
Year: 2023, eLife
journal article
 
Reanalyzing the genetic history of Kra-Dai speakers from Thailand and new insights into their genetic interactions beyond Mainland Southeast Asia
Piya Changmai, Yutthaphong Phongbunchoo, Jan Kočí, Pavel Flegontov
Year: 2023, Scientific Reports
journal article
 
Indian genetic heritage in Southeast Asian populations
Piya Changmai, Kitipong Jaisamut, Jatupol Kampuansai, Wibhu Kutanan, Nefize Ezgi Altinişik, Olga Flegontova, Angkhana S. Inta, Eren Yüncü, Worrawit S. Boonthai, Horolma Pamjav, David S. Reich, Pavel Flegontov ... other authors
Year: 2022, PLoS Genetics
journal article
 
Palaeo-Eskimo genetic ancestry and the peopling of Chukotka and North America
Pavel Flegontov, Nefize Ezgi Altinişik, Piya Changmai, N Rohland, S Mallick, N Adamski, DA Bolnick, N Broomandkhoshbacht, F Candilio, BJ Culleton, O Flegontova, TM Friesen, C Jeong, TK Harper, D Keating, DJ Kennett, AM Kim, TC Lamnidis, AM Lawson, I Olalde, J Oppenheimer, BA Potter, J Raff, RA Sattler, P Skoglund, K Stewardson, EJ Vajda, S Vasilyev, E Veselovskaya, MG Hayes, DH O Rourke, J Krause, R Pinhasi, D Reich, S Schiffels ... other authors
Year: 2019, Nature
journal article
 

Genomic Analysis of Hair Sheep From West/Central Africa Reveals Unique Genetic Diversity and Ancestral Links to Breed Formation in the Caribbean
Pamela Wiener, Juliane Friedrich, Melissa M Marr, Gustave Simo, Vincent N Tanya, Keith T Ballingall, Pavel Flegontov, Benjamin D Rosen, Guillaume Salle, Gordon Spangler, Curtis P Van Tassell, Mazdak Salavati, Felix Meutchieye, Emily L Clark ... other authors
Year: 2025, Molecular Ecology
journal article
 
Performance of qpAdm-based screens for genetic admixture on graph–shaped histories and stepping stone landscapes
Olga Flegontova, Ulas Isildak, Eren Yüncü, Matthew P Williams, Christian D Huber, Jan Kočí, Leonid Viazov, Piya Changmai, Pavel Flegontov ... other authors
Year: 2025, GENETICS
journal article
 
The genetic origin of the Indo-Europeans
Iosif Lazaridis, Nick Patterson, David Anthony, Leonid Viazov, Romain Fournier, Harald Ringbauer, Iñigo Olalde, Alexander A. Khokhlov, Egor P. Kitov, Natalia I. Shishlina, Sorin C. Ailincăi, Danila S. Agapov, Sergey A. Agapov, Elena Batieva, Baitanayev Bauyrzhan, Zsolt Bereczki, Alexandra Buzhilova, Piya Changmai, Andrey A. Chizhevsky, Ion Ciobanu, Mihai Constantinescu, Marietta Csányi, János Dani, Peter K. Dashkovskiy, Sándor Évinger, Anatoly Faifert, Pavel Flegontov, Alin Frînculeasa, Mădălina N. Frînculeasa, Tamás Hajdu, Tom Higham, Paweł Jarosz, Pavol Jelínek, Valeri I. Khartanovich, Eduard N. Kirginekov, Viktória Kiss, Alexandera Kitova, Alexeiy V. Kiyashko, Jovan Koledin, Arkady Korolev, Pavel Kosintsev, Gabriella Kulcsár, Pavel Kuznetsov, Rabadan Magomedov, Aslan M. Mamedov, Eszter Melis, Vyacheslav Moiseyev, Erika Molnár, Janet Monge, Octav Negrea, Nadezhda A. Nikolaeva, Mario Novak, Maria Ochir-Goryaeva, György Pálfi, Sergiu Popovici, Marina P. Rykun, Tatyana M. Savenkova, Vladimir P. Semibratov, Nikolai N. Seregin, Alena Šefčáková, Raikhan S. Mussayeva, Irina Shingiray, Vladimir N. Shirokov, Angela Simalcsik, Kendra Sirak, Konstantin N. Solodovnikov, Judit Tárnoki, Alexey A. Tishkin, Viktor Trifonov, Sergey Vasilyev, Ali Akbari, Esther S. Brielle, Kim Callan, Francesca Candilio, Olivia Cheronet, Elizabeth Curtis, Olga Flegontova, Lora Iliev, Aisling Kearns, Denise Keating, Ann Marie Lawson, Matthew Mah, Adam Micco, Megan Michel, Jonas Oppenheimer, Lijun Qiu, J. Noah Workman, Fatma Zalzala, Anna Szécsényi-Nagy, Pier Francesco Palamara, Swapan Mallick, Nadin Rohland, Ron Pinhasi, David Reich ... other authors
Year: 2025, NATURE
journal article
 
Testing times: disentangling admixture histories in recent and complex demographies using ancient DNA
Matthew P. Williams, Pavel Flegontov, Robert Maier, Christian D. Huber
Year: 2024, Genetics
journal article
 
Modeling of African population history using f-statistics is biased when applying all previously proposed SNP ascertainment schemes
Pavel Flegontov, Ulaş Işildak, Robert Maier, Eren Yüncü, Piya Changmai, David Reich ... other authors
Year: 2023, PLoS Genetics
journal article
 
On the limits of fitting complex models of population history to f-statistics
Robert Maier, Pavel Flegontov, Olga Flegontova, Ulaş Işildak, Piya Changmai, David Reich ... other authors
Year: 2023, eLife
journal article
 
Reanalyzing the genetic history of Kra-Dai speakers from Thailand and new insights into their genetic interactions beyond Mainland Southeast Asia
Piya Changmai, Yutthaphong Phongbunchoo, Jan Kočí, Pavel Flegontov
Year: 2023, Scientific Reports
journal article
 
Water masses shape pico-nano eukaryotic communities of the Weddell Sea
Olga Flegontova, Pavel Flegontov, Nikola Jachnikova, Julius Lukes, Ales Horak
Year: 2023, Communications Biology
journal article
 
Ancient DNA from Protohistoric Period Cambodia indicates that South Asians admixed with local populations as early as 1st–3rd centuries CE
Piya Changmai, Ron Pinhasi, Michael Pietrusewsky, Miriam T. Stark, Rona Michi Ikehara-Quebral, David Reich, Pavel Flegontov ... other authors
Year: 2022, Scientific Reports
journal article
 
Indian genetic heritage in Southeast Asian populations
Piya Changmai, Kitipong Jaisamut, Jatupol Kampuansai, Wibhu Kutanan, Nefize Ezgi Altinişik, Olga Flegontova, Angkhana S. Inta, Eren Yüncü, Worrawit S. Boonthai, Horolma Pamjav, David S. Reich, Pavel Flegontov ... other authors
Year: 2022, PLoS Genetics
journal article
 
Environmental determinants of the distribution of planktonic diplonemids and kinetoplastids in the oceans
Olga Flegontova, Pavel Flegontov, Paula Andrea Castaneda Londono, Waldemar Walczowski, Danijela Santic, Virginia P. Edgcomb, Julius Lukeš, Aleš Horák ... other authors
Year: 2020, ENVIRON MICROBIOL
journal article
 
Evolution of metabolic capabilities and molecular features of diplonemids, kinetoplastids, and euglenids
Anzhelika Butenko, FR Opperdoes, Olga Flegontova, A Horak, V Hampl, P Keeling, RMR Gawryluk, D Tikhonenkov, Pavel Flegontov, J Lukes ... other authors
Year: 2020, BMC BIOLOGY
journal article
 
Sergentomyia schwetzi: Salivary gland transcriptome, proteome and enzymatic activities in two lineages adapted to different blood sources
N Polanska, Aygul Ishemgulova , V Volfova, Pavel Flegontov, J Votypka, Vyacheslav Yurchenko, P Volf ... other authors
Year: 2020, PLOS ONE
journal article
 
Palaeo-Eskimo genetic ancestry and the peopling of Chukotka and North America
Pavel Flegontov, Nefize Ezgi Altinişik, Piya Changmai, N Rohland, S Mallick, N Adamski, DA Bolnick, N Broomandkhoshbacht, F Candilio, BJ Culleton, O Flegontova, TM Friesen, C Jeong, TK Harper, D Keating, DJ Kennett, AM Kim, TC Lamnidis, AM Lawson, I Olalde, J Oppenheimer, BA Potter, J Raff, RA Sattler, P Skoglund, K Stewardson, EJ Vajda, S Vasilyev, E Veselovskaya, MG Hayes, DH O Rourke, J Krause, R Pinhasi, D Reich, S Schiffels ... other authors
Year: 2019, Nature
journal article
 
The genetic history of admixture across inner Eurasia
C Jeong, O Balanovsky, E Lukianova, N Kahbatkyzy, Pavel Flegontov, V Zaporozhchenko, A Immel, CC Wang, O Ixan, E Khussainova, B Bekmanov, V Zaibert, M Lavryashina, E Pocheshkhova, Y Yusupov, A Agdzhoyan, S Koshel, A Bukin, P Nymadava, S Turdikulova, D Dalimova, M Churnosov, R Skhalyakho, D Daragan, Y Bogunov, A Bogunova, A Shtrunov, N Dubova, M Zhabagin, L Yepiskoposyan, V Churakov, N Pislegin, L Damba, L Saroyants, K Dibirova, L Atramentova, O Utevska, E Idrisov, E Kamenshchikova, I Evseeva, M Metspalu, AK Outram, M Robbeets, L Djansugurova, E Balanovska, S Schiffels, W Haak, D Reich, J Krause ... other authors
Year: 2019, Nature Ecology & Evoution
journal article
 
Ancient genomes document multiple waves of migration in Southeast Asian prehistory
M Lipson, O Cheronet, S Mallick, N Rohland, M Oxenham, M Pietrusewsky, TO Pryce, A Willis, H Matsumura, H Buckley, K Domett, H Nguyen, H Trinh, AA Kyaw, TT Win, B Pradier, N Broomandkhoshbacht, F Candilio, Piya Changmai, D Fernandes, M Ferry, B Gamarra, E Harney, J Kampuansai, W Kutanan, M Michel, M Novak, J Oppenheimer, K Sirak, K Stewardson, Z Zhang, Pavel Flegontov, R Pinhasi, D Reich ... other authors
Year: 2018, SCIENCE
journal article
 
Contrasting maternal and paternal genetic variation of hunter-gatherer groups in Thailand
W. Kutanan, J. Kampuansai, Piya Changmai, Pavel Flegontov, R. Schröder, E. Macholdt, A. Hübner, D. Kangwanpong, M. Stoneking ... other authors
Year: 2018, SCIENTIFIC REPORTS
journal article
 
Dispersals of the Siberian Y-chromosome haplogroup Q in Eurasia
Y. Z. Huang, H. Pamjav, Pavel Flegontov, V. Stenzl, S. Q. Wen, X. Z. Tong, C. C. Wang, L. X. Wang, L. H. Wei, J. Y. Gao, L. Jin, H. Li ... other authors
Year: 2018, MOLECULAR GENETICS AND GENOMICS
journal article
 
Extensive molecular tinkering in the evolution of the membrane attachment mode of the Rheb GTPase
Kristína Záhonová, Romana Petrželková, M Valach, E Yazaki, DV Tikhonenkov, Anzhelika Butenko, J Janouškovec, Š Hrdá, Vladimír Klimeš, G Burger, Y Inagaki, PJ Keeling, V Hampl, Pavel Flegontov, Vyacheslav Yurchenko, Marek Eliáš ... other authors
Year: 2018, SCIENTIFIC REPORTS
journal article
 
Neobodonids are dominant kinetoplastids in the global ocean
O. Flegontova, Pavel Flegontov, S. Malviya, J. Poulain, C. de Vargas, C. Bowler, J. Lukeš, A. Horák ... other authors
Year: 2018, ENVIRONMENTAL MICROBIOLOGY
journal article
 
Trypanosomatid mitochondrial RNA editing: dramatically complex transcript repertoires revealed with a dedicated mapping tool
E.S. Gerasimov, A. A. Gasparyan, I. Kaurov, B. Tichý, M. D. Logacheva, A. A. Kolesnikov, J. Lukeš, Vyacheslav Yurchenko, S.L. Zimmer, Pavel Flegontov ... other authors
Year: 2018, NUCLEIC ACIDS RESEARCH
journal article
 
Archaeogenomic analysis of the first steps of Neolithization in Anatolia and the Aegean
G. M. Kilinc, D. Koptekin, C. Atakuman, A. P. Sumer, H. M. Donertas, R. Yaka, C. C. Bilgin, A. M. Buyukkarakaya, D. Baird, Nefize Ezgi Altinişik, Pavel Flegontov, A. Gotherstrom, I. Togan, M. Somel ... other authors
Year: 2017, PROCEEDINGS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES
journal article
 
Extensive flagellar remodeling during the complex life cycle of Paratrypanosoma, an early-branching trypanosomatid
T. Skalický, E. Dobáková, R.J. Wheeler, M. Tesařová, Pavel Flegontov, D. Jirsová, J. Votýpka, Vyacheslav Yurchenko, F.J. Ayala, J. Lukeš ... other authors
Year: 2017, PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
journal article
 
Genome of Ca. Pandoraea novymonadis, an Endosymbiotic Bacterium of the Trypanosomatid Novymonas esmeraldas
Aleksei Kostygov, Anzhelika Butenko, A. Nenarokova, D. Tashyreva, Pavel Flegontov, J. Lukes, Vyacheslav Yurchenko ... other authors
Year: 2017, Frontiers in Microbiology
journal article
 
Genome sequencing reveals metabolic and cellular interdependence in an amoeba-kinetoplastid symbiosis
Goro Tanifuji, Ugo Cenci, Daniel Moog, Samuel Dean, Takuro Nakayama, Vojtěch David, Ivan Fiala, Bruce A. Curtis, Shannon J. Sibbald, Naoko T. Onodera, Morgan Colp, Pavel Flegontov, Jessica MacKinnon, Michael McPhee, Yuji Inagaki, Tetsuo Hashimoto, Steven Kelly, Keith Gull, Julius Lukeš, John M. Archibald ... other authors
Year: 2017, SCIENTIFIC REPORTS
journal article
 
Molecular mechanisms of thermal resistance of the insect trypanosomatid Crithidia thermophilal
Aygul Ishemgulova , Anzhelika Butenko, Lucie Kortišová, C. Boucinha, Anastasiia Grybchuk-Ieremenko, K.A. Morelli, M. Tesarova, Natalia Kraeva, Danyil Grybchuk, Tomáš Pánek, Pavel Flegontov, J. Lukes, J. Votypka, M.G. Pavan, F.R. Opperdoes, Viktoriia SPODAREVA, C.M. dAvila-Levy, Aleksei Kostygov, Vyacheslav Yurchenko ... other authors
Year: 2017, PLoS One
journal article
 
Comparative Metabolism of Free-living Bodo saltans and Parasitic Trypanosomatids
F. R. Opperdoes, Anzhelika Butenko, Pavel Flegontov, Vyacheslav Yurchenko, J. Lukes
Year: 2016, JOURNAL OF EUKARYOTIC MICROBIOLOGY
journal article
 
Extreme Diversity of Diplonemid Eukaryotes in the Ocean
Olga Flegontova, Pavel Flegontov, Shruti Malviya, Stephane Audic, Patrick Wincker, Colomban de Vargas, Chris Bowler, Julius Lukeš, Aleš Horák ... other authors
Year: 2016, CURR BIOL
journal article
 
Genome of Leptomonas pyrrhocoris: a high-quality reference for monoxenous trypanosomatids and new insights into evolution of Leishmania
Pavel Flegontov, Anzhelika Butenko, S. Firsov, Natalia Kraeva, Marek Eliáš, M. C. Field, D. Filatov, O. Flegontova, E. S. Gerasimov, J. Hlavacova, Aygul ISHEMGULOVA, A. P. Jackson, S. Kelly, Aleksei Kostygov, M.D. Logacheva, D. A. Maslov, F. R. Opperdoes, A. OReilly, J. Sadlova, Tereza Ševčíková, D. Venkatesh, C. Vlcek, P. Volf, J. Votypka, Kristína Záhonová, Vyacheslav Yurchenko, J. Lukes ... other authors
Year: 2016, SCIENTIFIC REPORTS
journal article
 
Genomic study of the Ket: a Paleo-Eskimo-related ethnic group with significant ancient North Eurasian ancestry
Pavel Flegontov, Piya Changmai, Anastassiya Zidkova, M. D. Logacheva, Nefize Ezgi Altinişik, O. Flegontova, M. S. Gelfand, E. S. Gerasimov, E. E. Khrameeva, O. P. Konovalova, T. Neretina, Y. V. Nikolsky, G. Starostin, V. V. Stepanova, I. V. Travinsky, M. Triska, P. Triska, T. V. Tatarinova ... other authors
Year: 2016, SCIENTIFIC REPORTS
journal article
 
Pitfalls of the Geographic Population Structure (GPS) Approach Applied to Human Genetic History: A Case Study of Ashkenazi Jews
Pavel Flegontov, A. Kassian, M. G. Thomas, V. Fedchenko, Piya Changmai, G. Starostin ... other authors
Year: 2016, GENOME BIOLOGY AND EVOLUTION
journal article
 
Toward high-resolution population genomics using archaeological samples
I. Morozova, Pavel Flegontov, A. S. Mikheyev, S. Bruskin, H. Asgharian, P. Ponomarenko, V. Klyuchnikov, G. ArunKumar, E. Prokhortchouk, Y. Gankin, E. Rogaev, Y. Nikolsky, A. Baranova, E. Elhaik, T. V. Tatarinova ... other authors
Year: 2016, DNA RESEARCH
journal article
 
Differential evolution approach to detect recent admixture
K. Kozlov, D. Chebotarev, M. Hassan, M. Triska, P. Triska, Pavel Flegontov, T. V. Tatarinova ... other authors
Year: 2015, BMC GENOMICS
journal article
 
Divergent mitochondrial respiratory chains in phototrophic relatives of apicomplexan parasites
Pavel Flegontov, J. Michalek, J. Janouskovec, D. H. Lai, M. Jirku, E. Hajduskova, A. Tomcala, T. D. Otto, P.J. Keeling, A. Pain, M. Obornik, J. Lukes ... other authors
Year: 2015, MOLECULAR BIOLOGY AND EVOLUTION
journal article
 
Gene Loss and Error-Prone RNA Editing in the Mitochondrion of Perkinsela, an Endosymbiotic Kinetoplastid
V. David, Pavel Flegontov, E. Gerasimov, G. Tanifuji, H. Hashimi, M. D. Logacheva, S. Maruyama, N. T. Onodera, M. W. Gray, J. M. Archibald, J. Lukes ... other authors
Year: 2015, mBio
journal article
 
výzkumný pobyt
Pavel Flegontov
Year: 2015
work experience abroad
 

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Author
Title
Type of thesis
Year
Altinişik Nefize Ezgi
Bridging the Americas and Eurasia: Population History of American Arctic Peoples
Doctoral thesis
2019



An archaeogenetic window on the Slavic dispersal in the first millennium CE: Leveraging the power of cultural outliers and haplotype-sharing networks
Main solver
M.Sc. Pavel Flegontov, Ph.D.
Period
1/2025 - 12/2027
Provider
Standardní projekt GA ČR
State
solved
 
Genomic formation of Indo-Europeans: new approaches to genetic admixture modelling guided by simulated data
Main solver
M.Sc. Pavel Flegontov, Ph.D.
Period
1/2021 - 6/2024
Provider
Standardní grantový projekt GA AV
State
solved
 
Subcontract research agreement Harvard
Main solver
M.Sc. Pavel Flegontov, Ph.D.
Period
1/2023 - 12/2023
Provider
Smluvní výzkum
State
finished
 
Subcontract research agreement Harvard
Main solver
M.Sc. Pavel Flegontov, Ph.D.
Period
1/2022 - 12/2022
Provider
Smluvní výzkum
State
finished
 
Archaeogenetic Study of Human Populations in Mainland Southeast Asia
Main solver
M.Sc. Pavel Flegontov, Ph.D.
Period
1/2019 - 6/2022
Provider
INTER-ACTION
State
finished
 
Genome and transcriptome of Hemistasia phaeocysticola, representative of a novel hyper-diverse clade of marine protists
Main solver
M.Sc. Pavel Flegontov, Ph.D.
Period
1/2016 - 12/2016
Provider
Specifický VŠ výzkum
State
finished
 

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