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Petr Pečinka

Projects

Academic degree, name, surname:

doc. RNDr. Petr Pečinka, CSc.

Room, floor, building:

M 204, Building M

Position:

Research interests and teaching:

Department (Faculty):

Department of Biology and Ecology (Faculty of Science)
Environmental Center (Faculty of Science)

Phone number, mobile:

+420 553 46 2318

E-mail:

No record found.

RNA analysis of the longest living vertebrate Greenland shark revealed an abundance of LINE-like elements in its transcriptome

Martin Bartas, Jiří Červeň, Natália Valková, Adriana Volná, Michaela Dobrovolná, Lucie Šislerová, Hörður Baldvinsson, Petr Pečinka, Václav Brázda ... other authors

Year: 2024, CZECH POLAR REPORTS

journal article

Analysis of G-Quadruplex-Forming Sequences in Drought Stress-Responsive Genes, and Synthesis Genes of Phenolic Compounds in Arabidopsis thaliana

Petr Pečinka, Natália Bohálová, Adriana Volná, Kristýna Kundrátová, Václav Brázda, Martin Bartas ... other authors

Year: 2023, Life

journal article

Beyond the Primary Structure of Nucleic Acids: Potential Roles of Epigenetics and Noncanonical Structures in the Regulations of Plant Growth and Stress Responses

Adriana Volná, Martin Bartas, Jakub Nezval, Radomír Pech, Petr Pečinka, Vladimír Špunda, Jiří Červeň ... other authors

Year: 2023, Humana Press

specialist book chapter

BEYOND THE PRIMARY STRUCTURE OF NUCLEIC ACIDS: THE ROLE OF EPIGENETICS AND QUADRUPLEX FORMING STRUCTURES IN STRESS RESPONSES

Adriana Volná, Martin Bartas, Jakub Nezval, Radomír Pech, Petr Pečinka, Vladimír Špunda, Jiří Červeň ... other authors

Year: 2023

presentations (congresses, symposia, conferences, workshops)

Extensive Bioinformatics Analyses Reveal a Phylogenetically Conserved Winged Helix (WH) Domain (Zτ) of Topoisomerase IIα, Elucidating Its Very High Affinity for Left-Handed Z-DNA and Suggesting Novel Putative Functions

Martin Bartas, Kristyna Slychko, Jiří Červeň, Petr Pečinka, Donna J. Arndt-Jovin, Thomas M. Jovin ... other authors

Year: 2023, INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES

journal article

Martin Bartas, Kristyna Slychko, Jiří Červeň, Petr Pečinka, Donna Jovin, Jovin Thomas ... other authors

Year: 2023, International Journal of Molecular Sciences

journal article

New Low Morphine Opium Poppy Genotype Obtained by TILLING Approach

Jiří Červeň, Martin Bartas, Petr Pečinka, viktor vrbovský, Jiří Horáček, Lenka ENDLOVÁ, Vladislav Čurn ... other authors

Year: 2023, Plants-Basel

journal article

Are There Hidden Genes in DNA/RNA Vaccines?

Christopher A. Beaudoin, Martin Bartas, Adriana Volná, Petr Pečinka, Tom L. Blundell

Year: 2022, Frontiers in Immunology

journal article

Regulation of Phenolic Compound Production by Light Varying in Spectral Quality and Total Irradiance

Radomír Pech, Adriana Volná, Lena Hunt, Martin Bartas, Jiří Červeň, Petr Pečinka, Vladimír Špunda, Jakub Nezval ... other authors

Year: 2022, International Journal of Molecular Sciences

journal article

Searching for New Z-DNA/Z-RNA Binding Proteins Based on Structural Similarity to Experimentally Validated Zα Domain

Martin Bartas, Kristyna Slychko, Jiří Červeň, Christopher A. Beaudoin, Tom L. Blundell, Petr Pečinka, Václav Brázda ... other authors

Year: 2022, International Journal of Molecular Sciences

journal article

Unheeded SARS-CoV-2 proteins? A deep look into negative-sense RNA

Martin Bartas, Adriana Volná, Christopher A. Beaudoin, Ebbe Toftgaard Poulsen, Jiří Červeň, Václav Brázda, Vladimír Špunda, Tom L. Blundell, Petr Pečinka ... other authors

Year: 2022, Briefings in Bioinformatics

journal article

What Do We Know about Barley miRNAs?

Adriana Volná, Martin Bartas, Petr Pečinka, Vladimír Špunda, Jiří Červeň

Year: 2022, International Journal of Molecular Sciences

journal article

Amino Acid Composition in Various Types of Nucleic Acid-Binding Proteins

Martin Bartas, Jiří Červeň, Simona Guziurová, Kristyna Slychko, Petr Pečinka

Year: 2021, International Journal of Molecular Sciences

journal article

Analyses of viral genomes for G-quadruplex forming sequences reveal their correlation with the type of infection

Natália Bohálová, Alessio Cantara, Martin Bartas, Patrik Kaura, Jiří Šťastný, Petr Pečinka, Miroslav Fojta, Jean-Louis Mergny, Václav Brázda ... other authors

Year: 2021, BIOCHIMIE

journal article

G-Quadruplex in Gene Encoding Large Subunit of Plant RNA Polymerase II: A Billion-Year-Old Story

Adriana Volná, Martin Bartas, Václav Karlický, Jakub Nezval, Kristýna Kundrátová, Petr Pečinka, Vladimír Špunda, Jiří Červeň ... other authors

Year: 2021, INT J MOL SCI

journal article

Letter to the Editor: Significant mutation enrichment in inverted repeat sites of new SARS-CoV-2 strains

Martin Bartas, Jiří Červeň, Adriana Volná, Miroslav Fojta, Václav Brázda, Petr Pečinka ... other authors

Year: 2021, BRIEF BIOINFORM

journal article

SARS-CoV-2 hot-spot mutations are significantly enriched within inverted repeats and CpG island loci

Pratik Goswami, Martin Bartas, Matej Lexa, Natalia Bohalova, Adriana Volná, Jiří Červeň, Veronika Červeňová, Petr Pečinka, Vladimír Špunda, Miroslav Fojta, Václav Brázda ... other authors

Year: 2021, BRIEFINGS IN BIOINFORMATICS

journal article

Searching for G-Quadruplex-Binding Proteins in Plants: New Insight into Possible G-Quadruplex Regulation

Adriana Volná, Martin Bartas, Jakub Nezval, Vladimír Špunda, Petr Pečinka, Jiří Červeň ... other authors

Year: 2021, BioTech

journal article

The Changes in the p53 Protein across the Animal Kingdom Point to Its Involvement in Longevity

Martin Bartas, Václav Brázda, Adriana Volná, Jiří Červeň, Petr Pečinka, Joanna Zawacka-Pankau ... other authors

Year: 2021, INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES

journal article

Tracing dsDNA Virus-Host Coevolution through Correlation of Their G-Quadruplex-Forming Sequences

Natália Bohálová, Alessio Cantara, Martin Bartas, Patrik Kaura, Jiří Šťastný, Petr Pečinka, Miroslav Fojta, Václav Brázda ... other authors

Year: 2021, International Journal of Molecular Sciences

journal article

Transcriptomic and Proteomic Analysis of Drought Stress Response in Opium Poppy Plants during the First Week of Germination

Kristýna Kundrátová, Martin Bartas, Petr Pečinka, Ondřej Hejna, Andrea Rychlá, Vladislav Čurn, Jiří Červeň ... other authors

Year: 2021, Plants-Basel

journal article

G-Quadruplexes in the Archaea Domain

Václav Brázda, Yu Luo, Martin Bartas, Patrik Kaura, Otilia Porubiaková, Jiří Šťastný, Petr Pečinka, Daniela Verga, Violette Da Cunha, Tomio S. Takahashi, Patrick Forterre, Hannu Myllykallio, Miroslav Fojta, Jean Louis Mergny ... other authors

Year: 2020, Biomolecules

journal article

Characterization of p53 Family Homologs in Evolutionary Remote Branches of Holozoa

Martin Bartas, Václav Brázda, Jiří Červeň, Petr Pečinka

Year: 2020, International Journal of Molecular Sciences

journal article

In-Depth Bioinformatic Analyses of Nidovirales Including Human SARS-CoV-2, SARS-CoV, MERS-CoV Viruses Suggest Important Roles of Non-canonical Nucleic Acid Structures in Their Lifecycles

Martin Bartas, Václav Brázda, Natália Bohálová, Alessio Cantara, Adriana Volná, Tereza STACHUROVÁ, Kateřina Malachová, Eva Jagelská, Otília Porubiaková, Jiří Červeň, Petr Pečinka ... other authors

Year: 2020, Frontiers in Microbiology

journal article

Identification of Distinct Amino Acid Composition of Human Cruciform Binding Proteins

Jiří Červeň, Petr Pečinka, Martin Bartas, Václav Brázda, Jack Liao, Pavla Bažantová ... other authors

Year: 2019, Molecular Biology

journal article

p53 Binds Preferentially to Non-B DNA Structures Formed by the Pyrimidine-Rich Strands of GAA center dot TTC Trinucleotide Repeats Associated with Friedreich's Ataxia

Robert Helma, Marek Petr, Matěj Adámik, Daniel Renciuk, Vlastimil Tichý, Alena Pastuchová, Zuzana Soldánová, Petr Pečinka, Richard Bowater, Miroslav Fojta, Marie Brázdová, Pavla BAŽANTOVÁ ... other authors

Year: 2019, Molecules

journal article

The Presence and Localization of G-Quadruplex Forming Sequences in the Domain of Bacteria

Martin Bartas, Michaela Čutová, Václav Brázda, Patrik Kaura, Jiří Šťastný, Jan Kolomazník, Jan Coufal, Pratik Goswami, Jiří Červeň, Petr Pečinka ... other authors

Year: 2019, Molecules

journal article

Bioinformatics analyses and in vitro evidence for five and six stacked G-quadruplex forming sequences

Martin Bartas, Václav Brázda, Václav Karlický, Jiří Červeň, Petr Pečinka

Year: 2018, BIOCHIMIE

journal article

Liver regeneration during the associating liver partition and portal vein ligation for staged hepatectomy procedure in Sus scrofa is positively modulated by stem cells

Martin Bartas, Jiří Červeň, Jan Oppelt, Matúš Peteja, Petr Vávra, Pavel Zonča, Václav Procházka, Václav Brázda, Petr Pečinka ... other authors

Year: 2018, Oncology letters

journal article

Preferential binding of p53 and BRCA1 proteins to naturally occurring G-quadruplexes forming sequences

Jiří Červeň, Nikol Mikysková, Anna Niziolová, Martin Bartas, Václav Brázda, Petr Pečinka ... other authors

Year: 2018

presentations (congresses, symposia, conferences, workshops)

Six-stacked G-quadruplexes as a preferential target of p53

Martin Bartas, Nikol Mikysková, Václav Brázda, Václav Karlický, Jiří Červeň, Vladimír Špunda, Petr Pečinka ... other authors

Year: 2018

presentations (congresses, symposia, conferences, workshops)

The Amino Acid Composition of Quadruplex Binding Proteins Reveals a Shared Motif and Predicts New Potential Quadruplex Interactors

Václav Brázda, Jiří Červeň, Martin Bartas, Nikol Mikysková, Jan Coufal, Petr Pečinka ... other authors

Year: 2018, Molecules

journal article

Bioinformatic study of putative five and six stacked G-quadruplexes occurence in Homo sapiens genome

Martin Bartas, Václav Brázda, Jiří Červeň, Václav Karlický, Vladimír Špunda, Petr Pečinka ... other authors

Year: 2017

abstract in proceedings

Antimutagenic and DNA Damage Protective Activities of a Grape Extract from Vitis vinifera

Jiří Červeň, Zuzana Rybková, Hana Sezimová, Petr Pečinka, Kateřina Malachová

Year: 2016

presentations (congresses, symposia, conferences, workshops)

Antimutagenic and DNA Damage Protective Activities of a Grape Extract from Vitis vinifera

Zuzana Rybková, Kateřina Malachová, Jiří Červeň, Hana Sezimová, Petr Pečinka

Year: 2016, Journal of Biosciences and Medicines

journal article

Isolation of bacterial and fungal BPA and TBBPA degraders from polluted soils

Jiří Červeň, Zuzana Rybková, Hana Sezimová, Kateřina Malachová, Petr Pečinka, Rong Ji ... other authors

Year: 2016

presentations (congresses, symposia, conferences, workshops)

Electrochemical Activity of Wedelolactone and Probing its Interaction with DNA Using Voltammetry at a Carbon Electrode

Jiří Červeň, Luďěk Havran, Petr Pečinka, Miroslav Fojta

Year: 2015, ELECTROANAL

journal article

Impact of cadmium, cobalt and nickel on sequence-specific DNA binding of p63 and p73 in vitro and in cells

Matěj Adámik, Pavla Bažantová, Lucie Navrátilová, Alena Polášková, Petr Pečinka, Lucie Holanová, Vlastimil Tichý, Marie Brázdová ... other authors

Year: 2015, BIOCHEM BIOPH RES CO

journal article

Effect of transition metals on sequencespecific binding of p53 family proteins

Pavla Bažantová, Jiří Červeň, Petr Pečinka, Matěj Adámik, Vlastimil Tichý, Marie Brázdová ... other authors

Year: 2014

abstract in proceedings

Electrochemical approach for detection of p53-DNA interactions

Jiří Červeň, Petr Pečinka, Pavla Bažantová

Year: 2014

abstract in proceedings

Kontaminace prostředí a změny na molekulárně genetické úrovni

Petr Pečinka, Jiří Červeň, Pavla Bažantová

Year: 2014, Ostravská univerzita v Ostravě

specialist book chapter

Studium dopadů průmyslových technologií na životní prostředí

Year: 2014, Ostravská univerzita v Ostravě

specialist book

Využití elektrochemických metod pro studium DNA-protein interakcí

Jiří Červeň, Petr Pečinka, Pavla Bažantová, Miroslav Fojta, Kateřina Malachová, Hana Sezimová ... other authors

Year: 2014

abstract in proceedings

EMSA detection of p53 sequence non-specific binding in PCR produced human DNA analogues

Jiří Červeň, Petr Pečinka, Pavla Bažantová, Barbora Chvátalová, Marie Brázdová

Year: 2013, J BIOMOL STRUCT DYN

journal article

Preferential Binding of Hot Spot Mutant p53 Proteins to Supercoiled DNA In Vitro and in Cells

Petr Pečinka, Marie Brázdová, Lucie Navrátilová, Vlastimil Tichý, Kateřina Němcová, Matěj Lexa, Roman Hrstka, Matěj Adámik, Bořivoj Vojtěšek, Emil Palaček, Wolfgang Deppert, Miroslav Fojta ... other authors

Year: 2013, PLOS one

journal article

Investigation of sequence specific interaction of p63 and mutant p35-p63 interaction in vitro and in vivo

Petr Pečinka, Pavla Bažantová, Jiří Červeň, Kateřina Malachová, Marie Brázdová

Year: 2012

abstract in proceedings

Selective binding of tumor suppressor p53 protein to topologically constrained DNA: Modulation by intercalative drugs

Petr Pečinka, Hana Pivoňková, P. Šebest, Olga Tichá, Kateřina Němcová, Marie Brázdová, Eva Brázdová-Jagelská, Václav Brázda, Miroslav Fojta ... other authors

Year: 2010, BIOCHEM BIOPH RES CO

journal article

Detection of genotoxicity by the means of DNA repair enzymes

Petr Pečinka, Petr Kočárek, Zuzana Pavlíčková, Vítězslav Plášek, Jiří Červeň, Kateřina Malachová, Šárka Cimalová ... other authors

Year: 2008, University of Ostrava

specialist book chapter

DNA topology influences p53 sequence-specific DNA binding through structural transitions within the target sites.

Eva Brázdová-Jagelská, Václav Brázda, Petr Pečinka, Emil Paleček, Miroslav Fojta

Year: 2008, BIOCHEM J

journal article

Oxidative damage of DNA induced in plasmid by the reactions with chemical agents

Zuzana Pavlíčková, Petr Kočárek, Petr Pečinka, Vítězslav Plášek, Kateřina Malachová, Jiří Červeň, Šárka Cimalová ... other authors

Year: 2008, University of Ostrava

specialist book chapter

Detection of genotoxicity of environmental contaminants using bacterial mutagenicity tests and by means of plasmid DNA

Zuzana Pavlíčková, Kateřina Malachová, Petr Pečinka

Year: 2007

presentations (congresses, symposia, conferences, workshops)

Detection of genotoxicity of chemical compounds using direct cleavage of sugar-phosphate backbone in supercoiled plasmid DNA

Zuzana Pavlíčková, Jiří Červeň, Kateřina Malachová, Petr Pečinka

Year: 2007, Chemické zvesti

journal article

Detection of genotoxicity of chemical compounds using direct cleavage of sugar-phosphate backbone in supercoiled plasmid DNA

Zuzana Pavlíčková, Jiří Červeň, Kateřina Malachová, Petr Pečinka

Year: 2007

presentations (congresses, symposia, conferences, workshops)

Inovace výběrových cvičení z mikrobiologie

Zuzana Pavlíčková, Kateřina Malachová, Petr Pečinka

Year: 2007

research reports and final reports of opposed grants

Laboratorní cvičení z molekulární biologie

Petr Pečinka

Year: 2007

learning texts, university textbooks, tutorials, handbooks

Obecná biologie

Kateřina Malachová, Petr Pečinka

Year: 2007

learning texts, university textbooks, tutorials, handbooks

Recognition of negatively or positively supercoiled DNA topoisomers by the p53 protein.

Hana Pivoňková, Olga Tichá, Miroslav Fojta, Petr Pečinka

Year: 2007, FEBS J

journal article

Usage of DNA repair enzymes for detection of DNA base damage induced by mutagenic and genotoxic compounds

Jiří Červeň, Zuzana Pavlíčková, Kateřina Malachová, Petr Pečinka

Year: 2007

presentations (congresses, symposia, conferences, workshops)

Usage of DNA repair enzymes for detection of DNA base damage induced by mutagenic and genotoxic compounds

Jiří Červeň, Zuzana Pavlíčková, Kateřina Malachová, Petr Pečinka

Year: 2007, Chemické zvesti

journal article

Vybudování laboratoře molekulární biologie na Katedře biologie a ekologie Přírodovědecké fakulty Ostravské univerzity v Ostravě

Petr Pečinka, Kateřina Malachová, Zuzana Pavlíčková

Year: 2007

research reports and final reports of opposed grants

A single-surface electrochemical biosensor for the detection of DNA triplet repeat expansion.

Miroslav Fojta, Petra Brázdilová, Kateřina Cahová, Petr Pečinka

Year: 2006, ELECTROANALSIS

journal article

DNA modification with cisplatin affects sequence-specific DNA binding of p53 and p73 in the target site-dependent manner

Hana Pivoňková, Petr Pečinka, Pavla Češková, Miroslav Fojta

Year: 2006, FEBS Journal

journal article

Nové trendy v biologických oborech

Kateřina Malachová, Petr Pečinka, Petr Kočárek, Zdeněk Majkus

Year: 2006

learning texts, university textbooks, tutorials, handbooks

Optimalizace postupů elektrochemické detekce amplifikovaných úseků genomové DNA s využitím molekulární hybridizace

Miroslav Fojta, Petra Brázdilová, Petr Pečinka, Kateřina Cahová, Miloslava Fojtová

Year: 2006

abstract in proceedings

Ovlivnění interakce proteinů p53 a p73 s cílovými sekvencemi modifikací DNA cisplatinou

Hana Pivoňková, Petr Pečinka, Pavla Češková, Miroslav Fojta

Year: 2006

abstract in proceedings

Sequence specific DNA binding of p53 can be enhanced by DNA supercoiling

Eva Brázdová-Jagelská, Václav Brázda, Petr Pečinka, Emil Paleček

Year: 2006

abstract in proceedings

Využití elektrochemických metod při analýze genové exprese

Miloslava Fojtová, Petra Brázdilová, Petr Pečinka, Kateřina Cahová, Luděk Havran, Miroslav Fojta ... other authors

Year: 2006

abstract in proceedings

Zkvalitnění a inovace výuky Cvičení z molekulární biologie

Zuzana Pavlíčková, Kateřina Malachová, Petr Pečinka

Year: 2006

research reports and final reports of opposed grants

Male infanticide in captive plains zebra (Equus burchelli).

Václav Brázda, Eva Jagelská, Lenka Karlovská, Petr Pečinka, Šárka Pospíšilová, Bořivoj Vojtěšek, Emil Paleček ... other authors

Year: 2005, Animal Behaviour

journal article

Regulation of the DNA-binding ability of P53 protein by phosphorylation and by monoclonal antibodies.

Václav Brázda, Eva Jagelská, Petr Pečinka, Emil Paleček

Year: 2005, FEBS J

journal article

Enhancement of p53 sequence-specific binding by DNA supercoiling

Emil Paleček, Václav Brázda, Eva Jagelská, Petr Pečinka, Lenka Karlovská, Marie Brázdová ... other authors

Year: 2004, ONCOGENE

journal article

Enhancement of p53 sequence-specific binding by DNA supercoiling.

Emil Paleček, Václav Brázda, Eva Jagelská, Petr Pečinka, Lenka Karlovská, Marie Brázdová ... other authors

Year: 2004, ONCOGENE

journal article

Enhancement of p53 sequence-specific binding by DNA supercolling

Eva Jagelská, Václav Brázda, Petr Pečinka, Lenka Karlovská, Emil Paleček

Year: 2004

abstract in proceedings

Microanalysis of DNA by stripping transfer voltammetry.

František Jelen, Alena Kouřilová, Petr Pečinka, Emil Paleček

Year: 2004, BIOELECTROCHEMISTRY

journal article

New ELISA technique for analysis of p53 protein/DNA binding properties

Eva Jagelská, Václav Brázda, Petr Pečinka, Šárka Pospíšilová, Emil Paleček

Year: 2004

abstract in proceedings

Regulation of the DNA binding ability of p53 protein by phosphorylation and by monoclonal antibodies

Václav Brázda, Eva Jagelská, Petr Pečinka, Emil Paleček

Year: 2004

abstract in proceedings

Regulation of the DNA binding ability of p53 protein by protein-kinase C, casein kinase II, cyclin dependent kinase and by monoclonal antibodies

Václav Brázda, Šárka Pospíšilová, Eva Jagelská, Petr Pečinka, Bořivoj Vojtěšek, Emil Paleček ... other authors

Year: 2004

abstract in proceedings

Aktivace vazby nádorového supresoru proteinu p53 k cílovým sekvencím superhelikální DNA

Václav Brázda, Eva Jagelská, Petr Pečinka, Lenka Karlovská, Emil Paleček

Year: 2003

abstract in proceedings

Analysis of p53 protein-DNA binding properties

Václav Brázda, Eva Jagelská, Lenka Karlovská, Petr Pečinka, Emil Paleček

Year: 2003

abstract in proceedings

Analysis of tumour suppressor p53 protein binding properties by new ELISA technique

Václav Brázda, Eva Jagelská, Petr Pečinka, Lenka Karlovská, Emil Paleček

Year: 2003

abstract in proceedings

Binding of tumor suppressor protein p53 to supercoiled and chemically modified DNA

Miroslav Fojta, Václav Brázda, Hana Pivoňková, Marie Brázdová, Petr Pečinka, Emil Paleček, Jan Paleček ... other authors

Year: 2003

abstract in proceedings

Microanalysis of DNA by stripping transfer voltammetry

František Jelen, René Kizek, Petr Pečinka, Emil Paleček

Year: 2003

abstract in proceedings

Rozpoznání struktury DNA nádorově supresorovým proteinem p53. Úloha jeho C-terminální domény

Miroslav Fojta, Hana Pivoňková, Marie Brázdová, Petr Pečinka, Václav Brázda, Emil Paleček ... other authors

Year: 2003

abstract in proceedings

Analysis of p53 protein-DNA binding properties by new ELISA technique, activation of p53-DNA binding

Václav Brázda, Eva Jagelská, Lenka Karlovská, Petr Pečinka, Šárka Pospíšilová, Bořivoj Vojtěšek, Emil Paleček ... other authors

Year: 2002

abstract in proceedings

Regulation of p53 binding to natural binding elements in supercoiled DNAs by monoclonal antibodies

Václav Brázda, Eva Jagelská, Lenka Karlovská, Petr Pečinka, Emil Paleček

Year: 2002

abstract in proceedings

Role of tumor suppressor p53 domains in supercoil-selective binding to DNA and p53-DNA filament formation

Marie Brázdová, Jan Paleček, Dmitrij Cherny, Sabina Billová, Petr Pečinka, Bořivoj Vojtěšek, Thomas M. Jovin, Emil Paleček, Miroslav Fojta ... other authors

Year: 2002

abstract in proceedings

Role of tumor suppressor p53domains in selective binding to supercoiled DNA.

Marie Brázdová, Jan Paleček, Dmitrij Cherny, Sabina Billová, Miroslav Fojta, Petr Pečinka, Bořivoj Vojtěšek, Thomas M. Jovin, Emil Paleček ... other authors

Year: 2002, Nucleic Acids Research

journal article

Role proteinových domén nádorového supresoru p53 při selektivní vazbě na superhelikální DNA a při tvorbě DNA-proteinových filament

Marie Brázdová, Jan Paleček, Dmitrij Cherny, Sabina Billová, Petr Pečinka, Bořivoj Vojtěšek, Thomas M. Jovin, Emil Paleček, Miroslav Fojta ... other authors

Year: 2002

abstract in proceedings

Effects of Oxidation Agents and Metal Ions on Binding of p53 to Supercoiled DNA.

Miroslav Fojta, Marie Brázdová, Hana Černocká, Petr Pečinka, Václav Brázda, Jan Paleček, Eva Jagelská, Bořivoj Vojtěšek, Šárka Pospíšilová, V. Subramaniam, Thomas M. Jovin, Emil Paleček ... other authors

Year: 2000, Journal of Biomolecular Structure & Dynamics

journal article

DNA tetraplex formation in the control region of c-myc.

Tomas Simonsson, Petr Pečinka, Mikael Kubista

Year: 1998, Nucleic Acids Research

journal article

studijní pobyt

Petr Pečinka

Year: 1996

work experience abroad

. Chemical and electrochemical probing of local DNA structures and the role of DNA structures in cancer and genetic diseases

Emil Paleček, Miroslav Fojta, František Jelen, Petr Pečinka

Year: 1995, Physics, Chem. and applications of molecular systems Brno

journal article

Chemical Probing of DNA Structure in Cells: Osmium Tetroxide, 2,2´-Bipyridine.

Emil Paleček, Petr Pečinka

Year: 1995

abstract in proceedings

Intramolecular TAT triplex in (dA)58.(dT)58. Influence of ions.

Petr Pečinka, Dori Huertas, Fernando Azorin, Emil Paleček

Year: 1995, Journal of Biomolecular Structure & Dynamics

journal article

Probing of DNA structure with osmium tetroxide complexes.

Emil Paleček, Petr Pečinka, Marie Vojtíšková, Jana Řičicová, Pavla Boublíková

Year: 1993, Collection Czech. Chem. Commun.

journal article

Osmium tetroxide complexes: single-strand selective probes of the DNA structure in vitro and in cells.

Emil Paleček, František Jelen, Karel Nejedlý, Jan Paleček, Petr Pečinka, Jana Řičicová, Marie Vojtíšková, Dagmar Zachová ... other authors

Year: 1992, Birghauser Verlag

specialist book chapter

výzkumný pobyt

Petr Pečinka

Year: 1992

work experience abroad

Osmium tetroxide reactivity of DNA bases in nucleotide sequencing and probing of DNA structure.

František Jelen, Petr Karlovský, Eva Makaturová, Petr Pečinka, Emil Paleček

Year: 1991, General Physiology and Biophysics

journal article

Chemical proabing of the DNA polymorphic structure in vitro and in situ.

Emil Paleček, Pavla Boublíková, František Jelen, Alena Krejčová, Eva Makaturová, Karel Nejedlý, Petr Pečinka, Marie Vojtíšková ... other authors

Year: 1990, Adenine Press

specialist book chapter

Protonated triplex DNA in E. coli cells as detected by chemical probing.

Petr Karlovský, Petr Pečinka, Marie Vojtíšková, Eva Makaturová, Emil Paleček

Year: 1990, FEBS Letters

journal article

Metallotropic forms of zinc, copper and cadmium carbonic-anhydrases and zinc carboxypeptidase reflected in differential pulse polarography.

Marie Studničková, Jana Pitřincová, Jan Kovář, Petr Pečinka, Jaroslav Turánek, Oldřich Fischer ... other authors

Year: 1989, Bioelectrochemistry and Bioenergetics

journal article

Binding of p53 protein to supercoiled DNA

Emil Paleček, Václav Brázda, Eva Jagelská, Marie Brázdová, Jan Paleček, Petr Pečinka, Lenka Karlovská, Dmitrij Cherny, Sabina Billová, Bořivoj Vojtěšek, Thomas M. Jovin, Miroslav Fojta ... other authors

Year:

abstract in proceedings

Improved procedures for electrochemical detection of DNA hybridization with PCR-amplified target DNA?s

Miroslav Fojta, Kateřina Cahová, Petra Brázdilová, Petr Pečinka, Miloslava Fojtová, Luděk Havran ... other authors

Year:

abstract in proceedings

Influence of cisplatin DNA modification on sequence-specific internations of p53 and p73 with different consensus sequence.

Hana Pivoňková, Petr Pečinka, Miroslav Fojta

Year:

abstract in proceedings

Interakce proteinu p53 s DNA: Sekvenčně specifická vazba a rozpoznání konformace DNA

Miroslav Fojta, Hana Pivoňková, Kateřina Němcová, P. Šebest, Petr Pečinka, Eva Brázdová-Jagelská, Marie Brázdová, Václav Brázda, Emil Paleček ... other authors

Year:

abstract in proceedings

Regulation of the DNA binding ability of p53 protein by phosphorylation and by monoclonal antibodies

Václav Brázda, Eva Jagelská, Petr Pečinka, Emil Paleček

Year:

abstract in proceedings

Stripping voltammetry of oligonucleotides

František Jelen, Alena Kouřilová, Petr Pečinka, René Kizek, Libuše Trnková, Emil Paleček ... other authors

Year:

abstract in proceedings

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Abbreviation

Subject

CZBI1

Biologie I

BIOIN

Praktický kurz bioinformatiky

BI1LF

BI2LF

DPROT

GENZS

MEMOB

Vybrané metody molekulární biologie

MEMOL

Vybrané metody molekulární biologie

MOBIC

Molekulární biologie (praktika)

MOBIP

Molekulární biologie (přednáška)

MOBIS

MOBIU

MOLBI

MOLBS

MOLGE

Základy molekulární biologie a genetiky

OBEBC

Molekulární biologie a genetika - cv.

OBEBI

Obecná biologie

OBEBP

Molekulární biologie a genetika - př.

POMBI

Pokročilé metody v molekulární biologii

PRS01

Specializační seminář 1

PRS02

Specializační seminář 2

PRS03

Specializační seminář 3

PRS04

Specializační seminář 4

PRS05

Specializační seminář 5

PRS06

Specializační seminář 6

PRS07

Specializační seminář 7

PRS08

Specializační seminář 8

PRS09

Specializační seminář 9

PRS10

Specializační seminář 10

PRS11

Specializační seminář 11

PRS12

Specializační seminář 12

QCII1

Článek v index. imp. časopise 1

QCII2

Článek v index. imp. časopise 2

QCII3

Článek v index. imp. časopise 3

QCIN1

Článek v index. neimp. časopise 1

QCIN2

Článek v index. neimp. časopise 2

QCIN3

Článek v index. neimp. časopise 3

QELME

Elektromigrační metody

QMOSY

Molekulární systematika

QMVK1

Akt. účast na mezinár. vědecké konf. 1

QMVK2

Akt. účast na mezinár. vědecké konf. 2

QMVK3

Akt. účast na mezinár. vědecké konf. 3

QNVK1

Akt. účast na národní vědecké konf. 1

QNVK2

Akt. účast na národní vědecké konf. 2

QNVK3

Akt. účast na národní vědecké konf. 3

QSTNK

Struktura nukleových kyselin

QTOGE

Toxikologie a genotoxikologie

QVYC1

Výuková činnost 1

QVYC2

Výuková činnost 2

QZMVP

Zapojení do mezinárodního výzk. projektu

QZNVP

Zapojení do národního výzk. projektu

QZPD2

Zahraniční studijní pobyt dlouhodobý

QZSPD

Zahraniční studijní pobyt dlouhodobý

QZSPK

Zahraniční studijní pobyt krátkodobý

QZSPS

Zahraniční studijní pobyt střednědobý

STRNK

Struktura a funkce nukleových kyselin

SZMBB

Část SZZ: Molekulární Bi a biochemie

VMMOB

Vybrané metody molekulární biologie

WBINF

Bioinformatics

WPMMB

Advanced course of molecular biology

WVMMB

Selected methods of molecular biology

XGENZ

Základy molekulární biologie a genetiky

YAPEB

Aktuální přístupy v experimentální biolo

YMOBI

Molekulární biologie

YOBBI

Obecná biologie

ZGENI

Základy genového inženýrství

0IBIO

Biologie

6MBL2

Molecular Biology Laboratory II

6MOBU

Molekulární a buněčná biologie

7BAPR

Bakalářská práce

7DIPR

Diplomová práce

7MOBC

Molekulární biologie (cvičení)

7MOBM

Molekulární biologie (cvičení malé)

7MOBP

Molekulární biologie (přednáška)

7MOBU

Molekulární a buněčná biologie

7MOBV

Molekulární biologie (cvičení velké)

7PBP2

Příprava bakalářské práce 2

7PDP1

Příprava diplomové práce 1

7PDP2

Příprava diplomové práce 2

7PMMB

Pokročilé metody v molekulární biologii

7SDP1

Seminář k diplomové práci 1

7SDP2

Seminář k diplomové práci 2

7SEM1

Specializovaný diplomový seminář 1

7SEM2

Specializovaný diplomový seminář 2

7SEM3

Specializovaný diplomový seminář 3

7SFNK

Struktura a funkce NK

7VMMB

Vybrané metody molekulární biologie

7ZAGI

Základy genového inženýrství

8ELME

Elektromigrační metody

8SFNK

Struktura a funkce nukleových kyselin

9BIO1

Biologie I

8PROT

Proteomika

9PROT

Proteomics

DEMME

Elektromigrační metody

BI2LF

Biologie II.

YBI2L

Biology II.

9BI2L

Biologie II.

Author

Title

Type of thesis

Year

Kundrátová Kristýna

Evaluation of gene expression associated with abiotic drought stress and accumulation of corresponding proteins, mapping potential regulatory regions in plants

Doctoral thesis

2024

Bartas Martin

Bioinformatic analyses of Non-B DNA structures and interacting proteins

Doctoral thesis

2020

Poláčková Petra

Study of the c-myc gene structure in linear and supercoiled DNA

Master's thesis

Marzoll Jiří

Structural bioinformatics of G-quadruplex binding proteins and their interactions with noncanonical nucleic acids structures

Master's thesis

2023

Guziurová Simona

Bioinformatic analysis of proteins interacting with DNA triplexes

Master's thesis

2021

Slychko Kristyna

Bioinformatic analysis of proteins interacting with Z-DNA

Master's thesis

2021

Quasnitza Marie

Interaction of tumor suppressor proteins with selected promotor sequences

Master's thesis

2020

Matějová Aneta

The optimalization of new high troughput method for the screening of potential G-quadruplex DNA sequences

Master's thesis

2019

Niziolová Anna

Thermostability of BRCA1-DNA complexes.

Master's thesis

2019

Vanduchová Veronika

In vitro characterization of selected human potential G-quadruplex loci

Master's thesis

2019

Kwaśný Ondřej

Binding of BRCA1 protein on local DNA structures.

Master's thesis

2018

Mikysková Nikol

Thermostability of p53-DNA complexes.

Master's thesis

2018

Kuchárová Zuzana

The study of protein BRCA1-DNA interactions.

Master's thesis

2017

Schillerová Sarah

The study of mutant p53 proteins interactions with DNA.

Master's thesis

2017

Wielgusová Kateřina

Influence of ions on the protein BRCA1-DNA interactions.

Master's thesis

2017

Brož David

The isolation and characterization of proteins involving in apoptosis.

Master's thesis

2016

Kopečková Monika

Making of recombinant plasmids for the study of DNA-protein interactions in vivo.

Master's thesis

2015

Podešvová Lucie

Making use of crosslinking for the analysis of DNA-protein interactions.

Master's thesis

2015

Tulingerová Zuzana

Interaction of p73 protein with linear and supercoiled DNA.

Master's thesis

2015

Wozniaková Lucie

The influence of local structure DNA forming sequences on the replication of DNA plasmids.

Master's thesis

2015

Žihala David

Study of the DNA-protein interactions by means of footprinting

Master's thesis

2015

Chvátalová Barbora

The influence of naturally occuring sequence DNA on the interaction w?th p53 protein.

Master's thesis

2014

Drozdková Denisa

Gel electrophoresis as a tool for the detection of 3´- DNA ends prolonged by terminal deoxynucleotidyl transferase.

Master's thesis

2014

Bažantová Pavla

Interaction of p63 protein with p53CON in linear and supercoiled DNA.

Master's thesis

2012

Hodslavská Veronika

Mutation analysis of LDL receptor gene (LDLR) in familial hypercholesterolemia patients

Master's thesis

2012

Klemensová Eva

Detection of DNA damage by means of piperidine cleavage, reparation enzymes and/or PCR.

Master's thesis

2012

Kovácsová Andrea

Binding of tumor suppressor p53 to tetraplex DNA.

Master's thesis

2012

Moudrá Eva

Detection of DNA-damage caused by industrial dyes.

Master's thesis

2012

Podzimková Veronika

The study of apoptotic structural changes in DNA by means of gel electrophoresis.

Master's thesis

2012

Semer Jan

Using of PCR for the detection of dsDNA damage by osmium tetroxide complexes and diethylpyrocarbonate.

Master's thesis

2012

Boháčová Petra

Influence of genotoxic and mutagenic agents on the topological state of plasmid DNA

Master's thesis

2011

Hermanová Monika

Detection of local open strtuctures in natural p53-binding sequences by means of structural probes.

Master's thesis

2011

Široká Jana

Electrochemical detection of single-stranded tracts synthetized by means of terminal transferase in circle and linear DNA molecules.

Master's thesis

2011

Maršálková Karla

Sequence-specific binding of protein p53. Influence of ions

Master's thesis

2010

Dočkalová Zuzana

Study on genetic erosion risks during conservation process of genetic

Master's thesis

2009

Červeň Jiří

DETECTION OF MUTAGENICITY AND GENOTOXICITY BY MEANS OF CHANGES IN PLASMID DNA TOPOLOGY

Master's thesis

2008

Antošíková Markéta

DNA Topoisomerases: Structure, Functions, and their Therapeutic potential

Bachelor's thesis

2023

Valčičáková Kateřina

microRNAs as indicators of human diseases

Bachelor's thesis

2023

Warmuzová Maxima

G-quadruplex binding proteins in plants

Bachelor's thesis

2022

Papikova Adela

Methods for studying precise localisation of protein: non-B-DNA structures interactions

Bachelor's thesis

2021

Bajtková Sabina

Chemicals stabilizing G-quaduplexes

Bachelor's thesis

2020

Bartošková Alena

Proteins interacting with left-handed Z-DNA.

Bachelor's thesis

2020

Marzoll Jiří

Proteins interacting with DNA G-quadruplexes

Bachelor's thesis

2020

Guziurová Simona

Proteins interacting wih DNA triplexes

Bachelor's thesis

2019

Palej Filip Roderik

DNA sequencing techniques

Bachelor's thesis

2019

Sluková Zdeňka

Mechanism of double-stranded breaks repair.

Bachelor's thesis

2018

Matějová Aneta

Influence of c-myc protein on the tumor formation.

Bachelor's thesis

2017

Vanduchová Veronika

Influence of pAPC protein on the tumor formation.

Bachelor's thesis

2017

Niziolová Anna

Binding of BRCA1 to damaged DNA. Interactions with proteins.

Bachelor's thesis

2016

Skýbová Tereza

Formation of epigenetics patterns during development of Drosophyla melanogaster.

Bachelor's thesis

2016

Ručková Romana

Detection of local structure DNA in vitro and in vivo.

Bachelor's thesis

2015

Wielgusová Kateřina

Influence of the tumour suppressor BRCA1 to repairing damaged DNA.

Bachelor's thesis

2015

Beinhauerová Martina

Structure and function of the tumour suppressor BRCA1.

Bachelor's thesis

2014

Beinhauerová Monika

Interaction of proteins of the 14-3-3 family with DNA.

Bachelor's thesis

2014

Kuchárová Zuzana

Structural changes in the regulation regions of protooncogenes and tumour suppressors.

Bachelor's thesis

2014

Kwaśný Ondřej

Interaction of IFI16 protein with DNAs and proteins.

Bachelor's thesis

2014

Schillerová Sarah

The influence of mutations in p53 gene on the tumour formation: changes in the binding preferences, the hot spots.

Bachelor's thesis

2014

Brož David

Analysis of interactions of p53 protein with sequences not containing p53CON.

Bachelor's thesis

2013

Kopečková Monika

Interactions of p53 protein with linear and supercoiled DNA not containing p53CON.

Bachelor's thesis

2013

Kortišová Lucie

Industrial dyes and their interaction with DNA.

Bachelor's thesis

2013

Podešvová Lucie

Structural analysis of naturally occuring DNA sequences interacting with tumor suppressor p53.

Bachelor's thesis

2013

Wozniaková Lucie

Influence of agents used in Ames test.on the topological state of plasmid DNA.

Bachelor's thesis

2013

Žihala David

Chromatine immunoprecipitation as a tool of the research of the interactions p53 with DNA.

Bachelor's thesis

2013

Bahounková Hana

Immunochemical methods used in the research of tumour suppressor p53.

Bachelor's thesis

2012

Chvátalová Barbora

Structural analysis of p53-binding sequence in supercoiled and linear DNA.

Bachelor's thesis

2012

Feber Kamil

Potential of usage of double-surface electrochemical methods in nucleic acids analysis.

Bachelor's thesis

2012

Holubová Aneta

Sequence-nonspecific interactions of protein p53 with DNA.

Bachelor's thesis

2012

Janečková Ema

Sequences forming G4-structures - properties, occurrence, their role in the gene expression.

Bachelor's thesis

2012

Stočesová Adéla

Detection of structural changes in the c-myc promotor by structural probes and polymerace chain reaction.

Bachelor's thesis

2011

Zbránková Veronika

Structure of homopurine.homopyrimidine sequences and their role at formation of genetic diseases.

Bachelor's thesis

2011

Bažantová Pavla

Binding of p63 protein to sequence-specific p53 (p53CON) binding sites.

Bachelor's thesis

2010

Ondráček Tomáš

Detection of DNA-cleavage by means of a piperidine and the polymerase chain reaction.

Bachelor's thesis

2010

Semer Jan

PCR optimization for the detection of DNA damage by means of osmium tetroxide complexes and diethylpyrocarbonate.

Bachelor's thesis

2010

Boháčová Petra

The comparison of genotoxic compounds behaviour in bacteria (in situ) and in vitro.

Bachelor's thesis

2009

Hermanová Monika

Structural characterization of naturally occurring binding sequences of p53 tumour suppressor

Bachelor's thesis

2009

Klemensová Eva

Detection of DNA damage by means of the polymerase chain reaction.

Bachelor's thesis

2009

Mičková Pavlína

Detection of mutagenic and potencial genotoxic chemicals by means of changes in plasmid DNA topology

Bachelor's thesis

2009

Moudrá Eva

Detection mutagenous and potential genotoxic compounds by repair enzymes

Bachelor's thesis

2009

Široká Jana

Detection of DNA damage by means of electrochemical methods.

Bachelor's thesis

2009

Urbanová Šárka

The preparation of recombinant plasmids containing p53CON binding sites. Characterization of p53-plasmid DNAs interactions.

Bachelor's thesis

2009

Kovácsová Andrea

The alkylation of DNA and methods of DNA-damage detection

Bachelor's thesis

2008

Maršálková Karla

Binding of a tumor suppressor p53 on open local structures in a superhelical DNA

Bachelor's thesis

2008

Šafarčíková Lucie

Sequence-specific and sequence-nonspecific binding of tumor suppressor p53 on scDNA

Bachelor's thesis

2008

Zumrová Kateřina

Utilization of electro-chemical methods for DNA-damage detection

Bachelor's thesis

2008

Dočkalová Zuzana

Research of genetic stability of selected pea (Pisum sativum L.) genotypes

Bachelor's thesis

2007

Dohnalová Táňa

Inactivation of FAD2 desaturase gene in flax (Linum usitatissimum L.) through the use of transgenic technology RNA interference

Bachelor's thesis

2007

Monitoring the spread of antibiotic-resistant bacteria and genes in the wastewater and recipient, the study of non-canonical forms of nucleic acids, investigation of molecular changes in Papaver somniferum exposed to stress conditions

Main solver

doc. RNDr. Petr Pečinka, CSc.

Period

1/2022 - 12/2022

Provider

Specifický VŠ výzkum

State

finished

Utilization of genomic and transcriptomic approaches to create genetic resources and breeding materials of poppy with specific traits

Main solver

doc. RNDr. Petr Pečinka, CSc.

Period

1/2018 - 12/2022

Provider

Ministerstvo zemědělství

State

finished

Isolation and characterization of DNA-binding properties of BRCA1 protein.

Main solver

doc. RNDr. Petr Pečinka, CSc.

Period

1/2016 - 12/2016

Provider

Specifický VŠ výzkum

State

finished

Structure and sequence specific DNA interactions of p53 protein family.

Main solver

doc. RNDr. Petr Pečinka, CSc.

Period

1/2015 - 12/2015

Provider

Specifický VŠ výzkum

State

finished

Vliv iontů těžkých kovů na vazebné schopnosti proteinů rodiny p53

Main solver

doc. RNDr. Petr Pečinka, CSc.

Period

1/2015 - 12/2015

Provider

Katedra biologie a ekologie, Projekty podporované z rozpočtu měst krajských úřadů

State

finished

Development of modern trends in experimental biology: importance of biomolecular interactions for functions of cellular structures

Main solver

doc. RNDr. Petr Pečinka, CSc.

Period

4/2012 - 3/2015

Provider

OP VK (Vzdělávání pro konkurenceschopnost)

State

finished

Characterization of binding properties of p53 protein family to structure and sequence specific DNA.

Main solver

doc. RNDr. Petr Pečinka, CSc.

Period

1/2014 - 12/2014

Provider

Specifický VŠ výzkum

State

finished

Moderní biofyzikální metody: pokročilé praktické vzdělávání v experimentální biologii

Main solver

doc. RNDr. Petr Pečinka, CSc.

Period

1/2010 - 12/2012

Provider

OP VK (Vzdělávání pro konkurenceschopnost)

State

finished

Tvorba předmětu "Pokročilé metody v molekulární biologii" pro studenty navazujícího studia Experimentální biologie

Main solver

doc. RNDr. Petr Pečinka, CSc.

Period

1/2011 - 12/2011

Provider

Fond rozvoje vysokých škol

State

finished

Interactions of wild type and mutant p53 proteins with damaged DNA and their roles in cellular response to anticancer chemotherapy

Main solver

doc. RNDr. Petr Pečinka, CSc.

Period

1/2007 - 12/2010

Provider

Standardní grantový projekt GA AV

State

finished

PřF 1074

Main solver

doc. RNDr. Petr Pečinka, CSc.

Period

9/2006 - 12/2009

Provider

Děkanát PřF

State

finished

Zkvalitnění laboratorních cvičení předmětu Vybrané metody molekulární biologie a zavedení nových praktických úloh

Main solver

doc. RNDr. Petr Pečinka, CSc.

Period

1/2009 - 12/2009

Provider

Fond rozvoje vysokých škol

State

finished

Vybudování laboratoře molekulární biologie na Katedře biologie a ekologie Přírodovědecké fakulty Ostravské univerzity v Ostravě

Main solver

doc. RNDr. Petr Pečinka, CSc.

Period

1/2007 - 12/2007

Provider

Fond rozvoje vysokých škol

State

finished

Petr Pečinka

Basic information

CV

Publications

Teaching

Supervised theses

Projects

Department of Biology and Ecology