Martin Bartas, Adriana Volná, Christopher A. Beaudoin, Ebbe Toftgaard Poulsen, Jiří Červeň, Václav Brázda, Vladimír Špunda, Tom L. Blundell, Petr Pečinka ... other authors

Year: 2022, Briefings in Bioinformatics

journal article

Amino Acid Composition in Various Types of Nucleic Acid-Binding Proteins

Martin Bartas, Jiří Červeň, Simona Guziurová, Kristyna Slychko, Petr Pečinka

Year: 2021, International Journal of Molecular Sciences

journal article

Evolution of Diverse Strategies for Promoter Regulation

Václav Brázda, Martin Bartas, Richard Bowater

Year: 2021, Trends in Genetics

journal article

Letter to the Editor: Significant mutation enrichment in inverted repeat sites of new SARS-CoV-2 strains

Martin Bartas, Jiří Červeň, Adriana Volná, Miroslav Fojta, Václav Brázda, Petr Pečinka ... other authors

Year: 2021, BRIEF BIOINFORM

journal article

The Changes in the p53 Protein across the Animal Kingdom Point to Its Involvement in Longevity

Martin Bartas, Václav Brázda, Adriana Volná, Jiří Červeň, Petr Pečinka, Joanna Zawacka-Pankau ... other authors

Year: 2021, INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES

journal article

In-Depth Bioinformatic Analyses of Nidovirales Including Human SARS-CoV-2, SARS-CoV, MERS-CoV Viruses Suggest Important Roles of Non-canonical Nucleic Acid Structures in Their Lifecycles

Martin Bartas, Václav Brázda, Natália Bohálová, Alessio Cantara, Adriana Volná, Tereza STACHUROVÁ, Kateřina Malachová, Eva Jagelská, Otília Porubiaková, Jiří Červeň, Petr Pečinka ... other authors

Year: 2020, Frontiers in Microbiology

journal article

The Presence and Localization of G-Quadruplex Forming Sequences in the Domain of Bacteria

Martin Bartas, Michaela Čutová, Václav Brázda, Patrik Kaura, Jiří Šťastný, Jan Kolomazník, Jan Coufal, Pratik Goswami, Jiří Červeň, Petr Pečinka ... other authors

Year: 2019, Molecules

journal article

Bioinformatics analyses and in vitro evidence for five and six stacked G-quadruplex forming sequences

Martin Bartas, Václav Brázda, Václav Karlický, Jiří Červeň, Petr Pečinka

Year: 2018, BIOCHIMIE

journal article

Analysis of G-Quadruplex-Forming Sequences in Drought Stress-Responsive Genes, and Synthesis Genes of Phenolic Compounds in Arabidopsis thaliana

Petr Pečinka, Natália Bohálová, Adriana Volná, Kristýna Kundrátová, Václav Brázda, Martin Bartas ... other authors

Year: 2023, Life

journal article

Are There Hidden Genes in DNA/RNA Vaccines?

Christopher A. Beaudoin, Martin Bartas, Adriana Volná, Petr Pečinka, Tom L. Blundell

Year: 2022, Frontiers in Immunology

journal article

Regulation of Phenolic Compound Production by Light Varying in Spectral Quality and Total Irradiance

Radomír Pech, Adriana Volná, Lena Hunt, Martin Bartas, Jiří Červeň, Petr Pečinka, Vladimír Špunda, Jakub Nezval ... other authors

Year: 2022, International Journal of Molecular Sciences

journal article

Searching for New Z-DNA/Z-RNA Binding Proteins Based on Structural Similarity to Experimentally Validated Zα Domain

Martin Bartas, Kristyna Slychko, Jiří Červeň, Christopher A. Beaudoin, Tom L. Blundell, Petr Pečinka, Václav Brázda ... other authors

Year: 2022, International Journal of Molecular Sciences

journal article

The Newly Sequenced Genome of Pisum sativum Is Replete with Potential G-Quadruplex-Forming Sequences-Implications for Evolution and Biological Regulation

Michaela Dobrovolná, Martin Bartas, Adriana Volná, Jean-Louis Mergny, Jiawei Wang, Václav Brázda, Natálie Bohálová, Vratislav Peška ... other authors

Year: 2022, International Journal of Molecular Sciences

journal article

Unheeded SARS-CoV-2 proteins? A deep look into negative-sense RNA

Martin Bartas, Adriana Volná, Christopher A. Beaudoin, Ebbe Toftgaard Poulsen, Jiří Červeň, Václav Brázda, Vladimír Špunda, Tom L. Blundell, Petr Pečinka ... other authors

Year: 2022, Briefings in Bioinformatics

journal article

What Do We Know about Barley miRNAs?

Adriana Volná, Martin Bartas, Petr Pečinka, Vladimír Špunda, Jiří Červeň

Year: 2022, International Journal of Molecular Sciences

journal article

Amino Acid Composition in Various Types of Nucleic Acid-Binding Proteins

Martin Bartas, Jiří Červeň, Simona Guziurová, Kristyna Slychko, Petr Pečinka

Year: 2021, International Journal of Molecular Sciences

journal article

Analyses of viral genomes for G-quadruplex forming sequences reveal their correlation with the type of infection

Natália Bohálová, Alessio Cantara, Martin Bartas, Patrik Kaura, Jiří Šťastný, Petr Pečinka, Miroslav Fojta, Jean-Louis Mergny, Václav Brázda ... other authors

Year: 2021, BIOCHIMIE

journal article

Beta-lactam resistance development during the treatment processes of municipal wastewater treatment plants

Tereza Stachurová, Hana Piková, Martin Bartas, Jaroslav Semerád, Kateřina Svobodová, Kateřina Malachová ... other authors

Year: 2021, CHEMOSPHERE

journal article

Evolution of Diverse Strategies for Promoter Regulation

Václav Brázda, Martin Bartas, Richard Bowater

Year: 2021, Trends in Genetics

journal article

G-Quadruplex in Gene Encoding Large Subunit of Plant RNA Polymerase II: A Billion-Year-Old Story

Adriana Volná, Martin Bartas, Václav Karlický, Jakub Nezval, Kristýna Kundrátová, Petr Pečinka, Vladimír Špunda, Jiří Červeň ... other authors

Year: 2021, INT J MOL SCI

journal article

G-quadruplexes in H1N1 influenza genomes

Václav Brázda, Otília Porubiaková, Allesio Cantara, Natália Bohálová, Jan Coufal, Martin Bartas, Miroslav Fojta, Jean Louis Mergny ... other authors

Year: 2021, BMC Genomics

journal article

Letter to the Editor: Significant mutation enrichment in inverted repeat sites of new SARS-CoV-2 strains

Martin Bartas, Jiří Červeň, Adriana Volná, Miroslav Fojta, Václav Brázda, Petr Pečinka ... other authors

Year: 2021, BRIEF BIOINFORM

journal article

SARS-CoV-2 hot-spot mutations are significantly enriched within inverted repeats and CpG island loci

Pratik Goswami, Martin Bartas, Matej Lexa, Natalia Bohalova, Adriana Volná, Jiří Červeň, Veronika Červeňová, Petr Pečinka, Vladimír Špunda, Miroslav Fojta, Václav Brázda ... other authors

Year: 2021, BRIEFINGS IN BIOINFORMATICS

journal article

Searching for G-Quadruplex-Binding Proteins in Plants: New Insight into Possible G-Quadruplex Regulation

Adriana Volná, Martin Bartas, Jakub Nezval, Vladimír Špunda, Petr Pečinka, Jiří Červeň ... other authors

Year: 2021, BioTech

journal article

The Changes in the p53 Protein across the Animal Kingdom Point to Its Involvement in Longevity

Martin Bartas, Václav Brázda, Adriana Volná, Jiří Červeň, Petr Pečinka, Joanna Zawacka-Pankau ... other authors

Year: 2021, INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES

journal article

Tracing dsDNA Virus-Host Coevolution through Correlation of Their G-Quadruplex-Forming Sequences

Natália Bohálová, Alessio Cantara, Martin Bartas, Patrik Kaura, Jiří Šťastný, Petr Pečinka, Miroslav Fojta, Václav Brázda ... other authors

Year: 2021, International Journal of Molecular Sciences

journal article

Transcriptomic and Proteomic Analysis of Drought Stress Response in Opium Poppy Plants during the First Week of Germination

Kristýna Kundrátová, Martin Bartas, Petr Pečinka, Ondřej Hejna, Andrea Rychlá, Vladislav Čurn, Jiří Červeň ... other authors

Year: 2021, Plants-Basel

journal article

Divergent distributions of inverted repeats and G-quadruplex forming sequences in Saccharomyces cerevisiae

Michaela Čutová, Jacinta Manta, Otília Porubiaková, Patrik Kaura, Jiří Šťastný, Eva Jagelská, Pratik Goswami, Martin Bartas, Václav Brázda ... other authors

Year: 2020, Genomics

journal article

Global analysis of inverted repeat sequences in human gene promoters reveals their non-random distribution and association with speci fic biological pathways

Václav Brázda, Martin Bartas, Jiří Lýsek, Jan Coufal, Miroslav Fojta

Year: 2020, Genomics

journal article

G-Quadruplexes in the Archaea Domain

Václav Brázda, Yu Luo, Martin Bartas, Patrik Kaura, Otilia Porubiaková, Jiří Šťastný, Petr Pečinka, Daniela Verga, Violette Da Cunha, Tomio S. Takahashi, Patrick Forterre, Hannu Myllykallio, Miroslav Fojta, Jean Louis Mergny ... other authors

Year: 2020, Biomolecules

journal article

Characterization of p53 Family Homologs in Evolutionary Remote Branches of Holozoa

Martin Bartas, Václav Brázda, Jiří Červeň, Petr Pečinka

Year: 2020, International Journal of Molecular Sciences

journal article

In-Depth Bioinformatic Analyses of Nidovirales Including Human SARS-CoV-2, SARS-CoV, MERS-CoV Viruses Suggest Important Roles of Non-canonical Nucleic Acid Structures in Their Lifecycles

Year: 2020, Frontiers in Microbiology

journal article

G4Hunter web application: a web server for G-quadruplex prediction

Václav Brázda, Jan Kolomazník, Jiří Lýsek, Martin Bartas, Miroslav Fojta, Jiří Šťastný, Jean-Louis Mergny ... other authors

Year: 2019, BIOINFORMATICS

journal article

Identification of Distinct Amino Acid Composition of Human Cruciform Binding Proteins

Jiří Červeň, Petr Pečinka, Martin Bartas, Václav Brázda, Jack Liao, Pavla Bažantová ... other authors

Year: 2019, Molecular Biology

journal article

The Presence and Localization of G-Quadruplex Forming Sequences in the Domain of Bacteria

Martin Bartas, Michaela Čutová, Václav Brázda, Patrik Kaura, Jiří Šťastný, Jan Kolomazník, Jan Coufal, Pratik Goswami, Jiří Červeň, Petr Pečinka ... other authors

Year: 2019, Molecules

journal article

Bioinformatics analyses and in vitro evidence for five and six stacked G-quadruplex forming sequences

Martin Bartas, Václav Brázda, Václav Karlický, Jiří Červeň, Petr Pečinka

Year: 2018, BIOCHIMIE

journal article

Complex analyses of inverted repeats in mitochondrial genomes revealed their importance and variability

Jana Čechová, Jiří Lýsek, Martin Bartas, Václav Brázda

Year: 2018, BIOINFORMATICS

journal article

Complex Analyses of Short Inverted Repeats in All Sequenced Chloroplast DNAs

Václav Brázda, Jiří Lýsek, Martin Bartas, Miroslav Fojta

Year: 2018, BioMed research international

journal article

Liver regeneration during the associating liver partition and portal vein ligation for staged hepatectomy procedure in Sus scrofa is positively modulated by stem cells

Martin Bartas, Jiří Červeň, Jan Oppelt, Matúš Peteja, Petr Vávra, Pavel Zonča, Václav Procházka, Václav Brázda, Petr Pečinka ... other authors

Year: 2018, Oncology letters

journal article

Preferential binding of p53 and BRCA1 proteins to naturally occurring G-quadruplexes forming sequences

Jiří Červeň, Nikol Mikysková, Anna Niziolová, Martin Bartas, Václav Brázda, Petr Pečinka ... other authors

Year: 2018

presentations (congresses, symposia, conferences, workshops)

Six-stacked G-quadruplexes as a preferential target of p53

Martin Bartas, Nikol Mikysková, Václav Brázda, Václav Karlický, Jiří Červeň, Vladimír Špunda, Petr Pečinka ... other authors

Year: 2018

presentations (congresses, symposia, conferences, workshops)

The Amino Acid Composition of Quadruplex Binding Proteins Reveals a Shared Motif and Predicts New Potential Quadruplex Interactors

Václav Brázda, Jiří Červeň, Martin Bartas, Nikol Mikysková, Jan Coufal, Petr Pečinka ... other authors

Year: 2018, Molecules

journal article

Bioinformatic study of putative five and six stacked G-quadruplexes occurence in Homo sapiens genome

Martin Bartas, Václav Brázda, Jiří Červeň, Václav Karlický, Vladimír Špunda, Petr Pečinka ... other authors

Year: 2017

abstract in proceedings

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Abbreviation

Subject

7BINF

Bioinformatika

7PMMB

Pokročilé metody v molekulární biologii

7VMMB

Vybrané metody molekulární biologie

Author

Title

Type of thesis

Year

Dvořáková Jitka

G-quadruplexes in blood coagulation pathway

Master's thesis

2023

Fromeliusová Amanda

Analysis of recurrent mutations in genomes of selected human viruses and their overlays with sequences capable of forming non-canonical nucleic acid structures

Master's thesis

2023

Harazimová Adéla

Analysis of Z-DNA/Z-RNA motifs occurrence in genomes of Viruses

Master's thesis

2023

Králiková Kateřina

Analysis of G-quadruplex-forming sequences in genes associated with Alzheimer's disease

Master's thesis

2023

Prausová Valerie

Coronaviral proteins with prion-like properties

Master's thesis

2023

Mikesková Gabriela

Characterization of DNA triplexes in the allograft rejection pathway

Master's thesis

2021

Dubská Kateřina

Biogenesis, molecular mechanisms, and functions of miRNAs in plants

Bachelor's thesis

2023

Prausová Valerie

Coronaviruses and the host cell cycle

Bachelor's thesis

2021

Fromeliusová Amanda

Analysis of G-quadruplex forming sequences in the genomes of viroids

Bachelor's thesis

2020

Mikesková Gabriela

DNA triplexes and prediction of their occurrence in model organisms

Bachelor's thesis

2019

Modernizace a komplexní převod předmětu Struktura a funkce nukleových kyselin do interaktivního prostředí Moodle aneb "Struktura a funkce nukleových kyselin: od A (-DNA) do Z (-DNA)")

Main solver

Mgr. et Mgr. Martin Bartas, Ph.D.

Period

1/2020 - 11/2020

Provider

Nezařazené projekty

State

finished

Progressive methods of study of biodegradation, antibiotic resistance and non-canonical DNA structures

Main solver

Mgr. et Mgr. Martin Bartas, Ph.D.

Period

1/2018 - 12/2018

Provider

Specifický VŠ výzkum

State

finished

Martin Bartas

Basic information

CV

Publications

Teaching

Supervised theses

Projects

Department of Biology and Ecology