Publications




Splice site diversity and abundance of noncanonical introns in diplonemids (Diplonemea, Euglenozoa)
Prasoon K. Thakur, Anzhelika Butenko, Filip Karásek, Michaela Svobodová, Drahomira Faktorova, Hana Pavlisková, Vladimir Varga, Ales Horak, Lukeš Julius, David Staněk
Year: 2025, RNA
journal article
 
Summary of taxonomy changes ratified by the International Committee on Taxonomy of Viruses (ICTV) from the Animal dsRNA and ssRNA(−) Viruses Subcommittee, 2025
Holly R. Hughes, Matthew J. Ballinger, Yiming Bao, Nicolas Bejerman, Kim R. Blasdell, Thomas Briese, Julia Brignone, Jean Paul Carrera, Lander De Coninck, William Marciel de Souza, Humberto Debat, Ralf G. Dietzgen, Ralf Dürrwald, Mert Erdin, Anthony R. Fooks, Kristian M. Forbes, Juliana Freitas-Astúa, Jorge B. Garcia, Jemma L. Geoghegan, Rebecca M. Grimwood, Masayuki Horie, Timothy H. Hyndman, Reimar Johne, John D. Klena, Hideki Kondo, Eugene V. Koonin, Aleksei Kostygov, Mart Krupovic, Jens H. Kuhn, Michael Letko, Jun-Min Li, Yiyun Liu, Maria Laura Martin, Nathaniel Mull, Yael Nazar, Norbert Nowotny, Márcio Roberto Teixeira Nunes, Arnfinn Lodden Økland, Dennis Rubbenstroth, Brandy J. Russell, Eric Schott, Stephanie Seifert, Carina Sen, Elizabeth Shedroff, Tarja Sironen, Teemu Smura, Camila Prestes Dos Santos Tavares, Robert B. Tesh, Natasha L. Tilston, Noël Tordo, Nikos Vasilakis, Peter J. Walker, Vyacheslav Yurchenko, Mingli Zhao
Year: 2025, Journal of General Virology
journal article
 
Taxonomic and nomenclatural history of Neckera (Bryophyta, Neckeraceae), including reinstatement of Rhystophyllum, the correct name for a segregate of this genus
Ryszard Ochyra, Vítězslav Plášek, John C. Brinda
Year: 2025, PhytoKeys
journal article
 
Temperature-dependent growth increments and number of moults shape temperature-size responses during larval development in the dragonfly Sympetrum striolatum (Odonata: Anisoptera)
Claire Duchet, Eva Bílková, Lamia Ouamoussa, Coralie Reymond, Stanislav Ožana, David S. Boukal
Year: 2025, Israel Journal of Ecology and Evolution
journal article
 
The Asgard archaeal origins of Arf family GTPases involved in eukaryotic organelle dynamics
Romana Vargová, Roxanne Chevreau, Marine Alves, Camille Courbin, Kara Terry, Pierre Legrand, Marek Eliáš, Julie Menetrey, Joel B. Dacks, Catherine L. Jackson
Year: 2025, NATURE MICROBIOLOGY
journal article
 
The Core MICOS Complex Subunit mic60 has Been Substituted by Two Cryptic Mitofilin-containing Proteins in Euglenozoa
Sheikh Shaghayegh, Marek Eliáš, Barbora Turpin Knotková, Corinna Benz, Tomáš Bílý, Alexey Bondar, Martina Tesarova, Eva Stříbrná, Jiří Heller, Michael Meinecke, Hassan Hashimi
Year: 2025, Molecular Biology and Evolution
journal article
 
The genetic origin of the Indo-Europeans
Iosif Lazaridis, Nick Patterson, David Anthony, Leonid Viazov, Romain Fournier, Harald Ringbauer, Iñigo Olalde, Alexander A. Khokhlov, Egor P. Kitov, Natalia I. Shishlina, Sorin C. Ailincăi, Danila S. Agapov, Sergey A. Agapov, Elena Batieva, Baitanayev Bauyrzhan, Zsolt Bereczki, Alexandra Buzhilova, Piya Changmai, Andrey A. Chizhevsky, Ion Ciobanu, Mihai Constantinescu, Marietta Csányi, János Dani, Peter K. Dashkovskiy, Sándor Évinger, Anatoly Faifert, Pavel Flegontov, Alin Frînculeasa, Mădălina N. Frînculeasa, Tamás Hajdu, Tom Higham, Paweł Jarosz, Pavol Jelínek, Valeri I. Khartanovich, Eduard N. Kirginekov, Viktória Kiss, Alexandera Kitova, Alexeiy V. Kiyashko, Jovan Koledin, Arkady Korolev, Pavel Kosintsev, Gabriella Kulcsár, Pavel Kuznetsov, Rabadan Magomedov, Aslan M. Mamedov, Eszter Melis, Vyacheslav Moiseyev, Erika Molnár, Janet Monge, Octav Negrea, Nadezhda A. Nikolaeva, Mario Novak, Maria Ochir-Goryaeva, György Pálfi, Sergiu Popovici, Marina P. Rykun, Tatyana M. Savenkova, Vladimir P. Semibratov, Nikolai N. Seregin, Alena Šefčáková, Raikhan S. Mussayeva, Irina Shingiray, Vladimir N. Shirokov, Angela Simalcsik, Kendra Sirak, Konstantin N. Solodovnikov, Judit Tárnoki, Alexey A. Tishkin, Viktor Trifonov, Sergey Vasilyev, Ali Akbari, Esther S. Brielle, Kim Callan, Francesca Candilio, Olivia Cheronet, Elizabeth Curtis, Olga Flegontova, Lora Iliev, Aisling Kearns, Denise Keating, Ann Marie Lawson, Matthew Mah, Adam Micco, Megan Michel, Jonas Oppenheimer, Lijun Qiu, J. Noah Workman, Fatma Zalzala, Anna Szécsényi-Nagy, Pier Francesco Palamara, Swapan Mallick, Nadin Rohland, Ron Pinhasi, David Reich
Year: 2025, NATURE
journal article
 
The Influence of Genome Composition and Temperature on the Hatching Success and Development of the Offspring of Allotriploid Cobitis (Pisces: Cobitidae) Females
Sara Duda, Olga Jablonska, Alicja Boroń, Roman Kujawa, Karel Janko, Dorota Juchno
Year: 2025, International Journal of Molecular Sciences
journal article
 
The larval gut of Spodoptera frugiperda harbours culturable bacteria with metabolic versatility after insecticide exposure
Junaid Ali Siddiqui, Fan Ruidong , Liu Yanjiang , Ali Hassan Syed, Benlin Yi , Chu Qingshuai, Ding Zeyang , Ghani Muhammad Imran, Liu Xuemi, Wakil Waqas, Liu Dong-Dong , Chen Xiaoyulong , Cernava Tomislav , Smagghe Guy
Year: 2025, Insect Molecular Biology
journal article
 
Translon: a single term for translated regions
Michał I. Świrski, Jack A. S. Tierney, M. Mar Albà, Dmitry E. Andreev, Julie L. Aspden, John F. Atkins, Michal Bassani-Sternberg, Marla J. Berry, Stefano Biffo, Kathleen Boris-Lawrie, Mark Borodovsky, Ian Brierley, Matthew Brook, Marie A. Brunet, Janusz M. Bujnicki, Neva Caliskan, Lorenzo Calviello, Anne-Ruxandra Carvunis, Jamie H. D. Cate, Can Cenik, Kung Yao Chang, Yiwen Chen, Sonia Chothani, Jyoti S. Choudhary, Patricia L. Clark, Jim Clauwaert, Lynn Cooley, Erik Dassi, Kellie Dean, Jean-Jacques Diaz, Christoph Dieterich, Rivka Dikstein, Jonathan D. Dinman, Sergey E. Dmitriev, Olga A. Dontsova, Christine M. Dunham, Sandeep M. Eswarappa, Philip J. Farabaugh, Pouya Faridi, Ivo Fierro-Monti, Andrew E. Firth, David Gatfield, Fátima Gebauer, Mikhail S. Gelfand, Nicola K. Gray, Rachel Green, Chris H. Hill, Ya-Ming Hou, Norbert Hübner, Zoya Ignatova, Pavel Ivanov, Shintaro Iwasaki, Rory Johnson, Ahmad Jomaa, Marko Jovanovic, Irwin Jungreis, Manolis Kellis, Jeffrey S. Kieft, Alex V. Kochetov, Eugene V. Koonin, Andrei A. Korostelev, Joanna Kufel, Ivan V. Kulakovskiy, Leo Kurian, Denis L. J. Lafontaine, Ola Larsson, Gary Loughran, Julius Lukeš, Marco Mariotti, Elena S. Martens-Uzunova, Thomas F. Martinez, Akinobu Matsumoto, Joel McManus, Jan Medenbach, Sergey V. Melnikov, Gerben Menschaert, Catharina Merchante, Martin Mikl, W. Allen Miller, Oliver Mühlemann, Olivier Namy, Danny D. Nedialkova, Jozef Nosek, Sandra Orchard, Petar Ozretić, Mihaela Pertea, Dmitri D. Pervouchine, Luísa Romão, David Ron, Xavier Roucou, Maria P. Rubtsova, Jorge Ruiz-Orera, Alan Saghatelian, Steven L. Salzberg, Lucia A. Seale, Cathal Seoighe, Petr V. Sergiev, Premal Shah, Nikolay Shirokikh, Sarah A. Slavoff, Nahum Sonenberg, Timothy J. Stasevich, Roman J. Szczesny, Tiina Tamm, Marek Tchórzewski, Ivan Topisirovic, Michel L. Tremblay, Tamir Tuller, Igor Ulitsky, Leoš Shivaya Valášek, Petra Van Damme, Gabriella Viero, Juan Antonio Vizcaino, Christine Vogel, Edward W. J. Wallace, Jonathan S. Weissman, Eric Westhof, Nicola Whiffin, Daniel N. Wilson, Zhi Xie, Jonathan W. Yewdell, Martina M. Yordanova, Chien-Hung Yu, Vyacheslav Yurchenko, Bojan Zagrovic, Eivind Valen, Pavel V. Baranov
Year: 2025, Nature Methods
journal article
 
Trypanosomes in Neotropical frogs: unveiling hidden megadiversity and complex host–parasite patterns
Jan Votýpka, Miloslav Jirků, Viktoriia SPODAREVA, Jana Režnarová, Klára Poloprutská, Petr Pajer, David Milner, Thomas A. Richards, Vyacheslav Yurchenko, Roberto Ibáñez, Julius Lukeš, Aleksei Kostygov
Year: 2025, Open Biology
journal article
 
Two new Docosia Winnertz species (Diptera: Mycetophilidae) from Transcaucasia, with DNA sequence data and updated molecular phylogeny
Olavi Kurina, Nikola BURDÍKOVÁ, Jan Ševčík
Year: 2025, Zootaxa
journal article
 
Two new species of the genus Salmoneus Holthuis, 1955 (Dacapoda: Caridea: Alpheidae) from the Western Pacific
Hossein Ashrafi, Zdeněk Ďuriš
Year: 2025, Zootaxa
journal article
 
Vliv živinového náboje média a testovacího organismu na výsledky testování toxicity kovu CrVI řasovým minitestem
Jaromír Lukavský, Jana Kvíderová, Veronika Cholevová
Year: 2025, Vodní hospodářství
journal article
 
Wetland fish in peril: A synergy between habitat loss and biological invasions drives the extinction of neglected native fauna
Marek Šmejkal, Lukáš Kalous, Johan Auwerx, Pankaj A. Gorule, Ivan Jarić, Ondřej Dočkal, Jakub Fedorčák, Milan Muška, Kiran Thomas, Péter Takács, Árpád Ferincz, Lukáš Choleva, Dunja K. Lamatsch, Josef Wanzenböck, Jeroen Van Wichelen
Year: 2025, Biological Conservation
journal article
 
Z-DNA Hunter tool for straightforward detection of Z-DNA forming regions and a case study in Drosophila
Michal Petrovič, Martin Bartas, Alistair N Garratt, Petr Pečinka, Michaela Dobrovolná, Klára Koňaříková, Oldřich Trenz, Václav Brázda, Jiří Šťastný
Year: 2025, NAR Genomics and Bioinformatics
journal article
 
A cryptic plastid and a novel mitochondrial plasmid in Leucomyxa plasmidifera gen. and sp. nov. (Ochrophyta) push the frontiers of organellar biology
Dovilé Barcyté, Karin Jaške, Tomáš Pánek, Tatiana Yurchenko, Tereza Ševčíková, Anežka Eliášová, Marek Eliáš
Year: 2024, Open Biology
journal article
 
A cyclical switch of gametogenic pathways in hybrids depends on the ploidy level
Dmitrij Dedukh, Anatolie Marta, Ra-Yeon Myung, Myeong-Hun Ko, Da-Song Choi, Yong-Jin Won, Karel Janko
Year: 2024, Communications Biology
journal article
 
A hybrid TIM complex mediates protein import into hydrogenosomes of Trichomonas vaginalis
Abhijith Makki, Sami Kereïche, Tien Le, Jitka Kučerová, Petr Rada, Vojtěch Žárský, Ivan Hrdý, Jan Tachezy
Year: 2024, BMC BIOL
journal article
 
A New Genus and Species of Marine Symbiotic Shrimp (Crustacea: Decapoda: Palaemonidae) from New Caledonia
Zdeněk Ďuriš, Karolína Fišarová
Year: 2024, Diversity
journal article
 
A new species of Synalpheus Spence Bate, 1888 (Caridea: Alpheidae) from Aldabra
Hossein Ashrafi
Year: 2024, Zootaxa
journal article
 
A novel nabelschnur protein regulates segregation of the kinetoplast DNA in Trypanosoma brucei
Lawrence Rudy Cadena, Michael Hammond, Martina Tesarova, Ľubomíra Chmelová, Michaela Svobodová, Ignacio M. Durante, Vyacheslav Yurchenko, Lukeš Julius
Year: 2024, CURRENT BIOLOGY
journal article
 
A novel strain of Leishmania braziliensis harbors not a toti- but a bunyavirus
Aleksei Kostygov, Danyil Grybchuk, Senne Heeren, Evgeny S. Gerasimov, Donnamae Saavedra Klocek, Sai Aditya Reddy Lingampally, Jovana Sadlova, Lenka Pacáková, Alain Kohl, František Stejskal, Petr Volf, Jean-Claude Dujardin, Vyacheslav Yurchenko
Year: 2024, PLOS NEGLECTED TROPICAL DISEASES
journal article
 
A review of Palaemonella (Decapoda: Caridea: Palaemonidae), with clarification of the taxonomic status of Cuapetes americanus, Eupontonia and Vir
Pavlína Frolová, Eva van der Veer, Charles H.J.M. Fransen, Zdeněk Ďuriš
Year: 2024, INVERTEBR SYST
journal article
 
A unique symbiosome in an anaerobic single-celled eukaryote
Jon Jerlström-Hultqvist, Lucie Gallot-Lavallée, Dayana E. Salas-Leiva, Bruce A. Curtis, Kristína Záhonová, Ivan Cepicka, Courtney W. Stairs, Shweta V. Pipaliya, Joel B. Dacks, John M. Archibald, Andrew J. Roger
Year: 2024, Nature Communications
journal article
 
Abiotic Stresses in Plants: From Molecules to Environment
Martin Bartas
Year: 2024, INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES
journal article
 
Adaptive patterns of anti-predator escape behavior in a globally introduced bird species
Tomáš Grim, Dor Roi, Hauber Mark
Year: 2024, NeoBiota
journal article
 
Analyzing injury patterns in climbing: a comprehensive study of risk factors
Markéta Kovářová, Petr Pyszko, Kateřina Kikalová
Year: 2024, Sports
journal article
 
Aspiralizoros gen. nov. for Spiralizoros ceylonicus (Zoraptera: Spiralizoridae), an endemic species overlooked for more than a century
Petr Kočárek, Ivona Kočárková
Year: 2024, International Journal of Tropical Insect Science
journal article
 
Bioacoustics reveals the uniqueness of rarely kept tree hyraxes
Irena Schneiderová, Jan Pluháček, Simon Bearder, Hanna Rosti
Year: 2024, JOURNAL OF ZOO AND AQUARIUM RESEARCH
journal article
 
Biodiverzita vážek NPR Rejvíz a dalších jesenických rašelinišť v kontextu klimatických změn
Aleš Dolný
Year: 2024
presentations (congresses, symposia, conferences, workshops)
 
Blastocrithidia nonstop mitochondrial genome and its expression are remarkably insulated from nuclear codon reassignment
Dmitry A Afonin, Evgeny S Gerasimov, Ingrid Sveráková, Kristína Záhonová, Ondřej Gahura, Amanda Tábita da Silva Albanaz, Eva Myšková, Anastasiia Bykova, Zdeněk Paris, Lukeš Julius, Fred R. Opperdoes, Anton Horvath, Sara L. Zimmer, Vyacheslav Yurchenko
Year: 2024, Nucleic Acids Research
journal article
 
Burmaculex (Diptera: Culicidae) from mid-Cretaceous Burmese amber, with the first description of a male and three new species
RYSZARD SZADZIEWSKI, QING-QING ZHANG, BŁAŻEJ BOJARSKI, Jan Ševčík, Ewa Krzemińska, Wiesław Krzeminski
Year: 2024, Palaeoentomology
journal article
 
Color polymorphism in Leucorrhinia dubia, insights from citizen science and ecogeographical analysis
Oto Kaláb, Anna Bližňáková, Eva Bílková, Petr Pyszko, Aleš Dolný, Stanislav Ožana
Year: 2024
presentations (congresses, symposia, conferences, workshops)
 
Comparative analysis of mitochondrion- related organelles in anaerobic amoebozoans
Kristína Záhonová, Zoltán Füssy, Courtney Stairs, Michelle M Leger, Jan Tachezy, Ivan Čepička, Andrew J. Roger, Vladimír Hampl
Year: 2024, MICROBIAL GENOMICS
journal article
 
Comparative cytogenetics of three Zoraptera species as a basis for understanding chromosomal evolution in Polyneoptera insects
Marek Jankásek, Petr Kočárek, František Šťáhlavský
Year: 2024, PeerJ
journal article
 
Competition and drought affect cleistogamy in a non-additive way in the annual ruderal Lamium amplexicaule
Bojana Stojanova, Anežka Eliášová, Tomáš Tureček
Year: 2024, AOB PLANTS
journal article
 
Comprehensive analysis of the Kinetoplastea intron landscape reveals a novel intron-containing gene and the first exclusively trans-splicing eukaryote
Aleksei Kostygov, Karolína Skýpalová, Natalia Kraeva, Elora Kalita, Vyacheslav Yurchenko, Anzhelika Butenko, Cameron McLeod, Mark C. Field, Lukeš Julius
Year: 2024, BMC Biology
journal article
 
Create, Analyze, and Visualize Phylogenomic Datasets Using PhyloFisher
Robert E. Jones, Alexander K. Tice, Marek Eliáš, Laura Eme, Martin Kolísko, Serafim Nenarokov, Tomáš Pánek, Antonis Rokas, Eric D. Salomaki, Jürgen F. H. Strassert, Xing-Xing Shen, David ŽIHALA, Matthew W. Brown
Year: 2024, Current Protocols
journal article
 
Cultural and Population Dynamics in the Ural Region: Insights into the Early Medieval Magyar Formation from Recent Archaeogenetic Research
Leonid Viazov, Balázs Gyuris, Oleksii Komar, Attila Türk
Year: 2024, STRATUM PLUS
journal article
 
Davimacrocera, a New Extant Genus of Keroplatidae, with Notes on the Fossil Genus Burmacrocera (Diptera)
Jan Ševčík
Year: 2024, INSECTS
journal article
 
Description and Phylogenetic Position of a New Genus and Species of Deep-Water Alpheid Shrimp Associated with Glass Sponges off New Caledonia (Decapoda: Caridea)
Seyedhossein Ashrafikarahroudi, Zdeněk Ďuriš, Arthur Anker
Year: 2024, Zoological Studies
journal article
 
Distribution and Functional Analysis of Isocitrate Dehydrogenases across Kinetoplastids
Ľubomíra Chmelová, Kristína Záhonová, Amanda Tábita da Silva Albanaz, Liudmyla Hrebenyk, Anton Horvath, Vyacheslav Yurchenko, Ingrid Sveráková
Year: 2024, GENOME BIOLOGY AND EVOLUTION
journal article
 
Encyclopedia of Family A DNA Polymerases Localized in Organelles: Evolutionary Contribution of Bacteria Including the Proto-Mitochondrion
Ryo Harada, Yoshihisa Hirakawa, Akinori Yabuki, Eunsoo Kim, Euki Yazaki, Ryoma Kamikawa, Kentaro Nakano, Marek Eliáš, Yuji Inagaki
Year: 2024, MOLECULAR BIOLOGY AND EVOLUTION
journal article
 
Eustigmatophyte model of red-shifted chlorophyll a absorption in light-harvesting complexes
Alessandro Agostini, David Bína, Dovilé Barcyté, Marco Bortolus, Marek Eliáš, Donatella Carbonera, Radek Litvín
Year: 2024, Communications Biology
journal article
 
Expedition Gadeloupe, La Planète Revisitée, 2024
Zdeněk Ďuriš, Anna Šobáňová, Milan Koch, Seyedhossein Ashrafikarahroudi
Year: 2024
work experience abroad
 
Flat-footed Females and Missing Males: A New Genus and Species of Pleciofungivoridae (Diptera: Bibionomorpha) Represents the First Record of the Family from Mid-Cretaceous Kachin Amber
Qingqing Zhang, Wiesław Krzemiński, Jan Ševčík, Vladimir Blagoderov, Agnieszka Soszyńska-Maj, Kornelia Skibińska
Year: 2024, ACTA GEOL SIN-ENGL
journal article
 
Freshwater 'microcroissants' shed light on a novel higher-level clade within the Trebouxiophyceae and reveal the genus Chlorolobion to be a trebouxiophyte
Dovilé Barcyté, Ladislav Hodač, Marek Eliáš
Year: 2024, European Journal of Phycology
journal article
 
Genetic admixture between Central European and Alpine wolf populations
Pavel Hulva, Sebastian Collet, Lucie Baránková, Kamila Valentová, Jana Šrutová, Harald Bauer, Martin Gahbauer, Jan Mokrý, Dušan Romportl, Adam Francis Smith, Aleš Vorel, Vladimír Zyka, Carsten Nowak, Barbora Černá Bolfíková, Marco Heurich
Year: 2024, Wildlife Biology
journal article
 
Global changes in the odonate family ratios in response to the tropical forest degradation
Hana Šigutová, Petr Pyszko, Dan Bárta, Collins Ayine Nsor, Aleš Dolný
Year: 2024, SCIENCE OF THE TOTAL ENVIRONMENT
journal article
 

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